thank you for pointing it out. However, adding the 'Imagescience' update
site and updating didn't improve things. Next, I tried installing a
win-32). But FigureJ also didn't work, with the difference that I got
> Hi Christian,
>
> As Jerome alluded to, ImageScience moved out of core Fiji and onto its own
> update site.
>
> See:
>
http://imagej.net/2016-01-05_-_ImageScience_is_moving_to_an_update_site>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect -
http://loci.wisc.edu/software> ImageJ2 lead, Fiji maintainer -
http://imagej.net/User:Rueden> Did you know ImageJ has a forum?
http://forum.imagej.net/>
>
> On Fri, Feb 5, 2016 at 7:24 AM, Jerome Mutterer <
>
[hidden email]> wrote:
>
>> Dear Christian, dear all,
>>
>> You're getting this error message because FigureJ makes use of the
>> imagescience.jar library that provides high quality image transforms. To be
>> more precise, it uses the Affine.run method, the signature of which changed
>> at some point in imagescience. From your error message, I'd guess that
>> you've upgraded imagescience, but not figurej to their latest versions.
>> As you're running Fiji, the easiest way to upgrade is through the updater,
>> just make sure to subscribe to the current update sites that provides
>> ImageScience and FigureJ:
>> *ImageScience*
http://sites.imagej.net/ImageScience/>> *IBMP-CNRS*
http://sites.imagej.net/Mutterer/If you're not using the
>> updater for some reason, you can get the latest versions of the needed file
>> from:
>>
>>
http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:figurej:start#installation_details_for_imagej>>
>> Sincerely,
>>
>> Jerome
>>
>>
>>
>>
>> On 5 February 2016 at 13:10, Christian Goosmann <
>>
[hidden email]> wrote:
>>
>>> Dear List
>>> FigureJ seems to be broken. When trying to send an image to a panel, it
>>> throws an exception with the message:
>>>
>>> Exception in thread "AWT-EventQueue-0" java.lang.NoSuchMethodError:
>>>
>> imagescience.transform.Affine.run(Limagescience/image/Image;Limagescience/transform/Transform;IZZ)Limagescience/image/Image;
>>> at utilities.MyImageMath.getPixels(MyImageMath.java:53)
>>> at FigureJ_Tool.transferROIDataToPanel(FigureJ_Tool.java:451)
>>> at FigureJ_Tool.cleanGUIandTransferROI(FigureJ_Tool.java:1984)
>>> at
>>>
>> FigureJ_Tool$FigureControlPanel$22.actionPerformed(FigureJ_Tool.java:1195)
>>> at
>>> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
>>> at
>>>
>> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
>>> at
>>>
>> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
>>> at
>>> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
>>> at
>>>
>> javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
>>> at
>>> java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
>>> at java.awt.Component.processMouseEvent(Component.java:6289)
>>> at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
>>> at java.awt.Component.processEvent(Component.java:6054)
>>> at java.awt.Container.processEvent(Container.java:2041)
>>> at java.awt.Component.dispatchEventImpl(Component.java:4652)
>>> at java.awt.Container.dispatchEventImpl(Container.java:2099)
>>> at java.awt.Component.dispatchEvent(Component.java:4482)
>>> at
>>> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
>>> at
>>> java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
>>> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
>>> at java.awt.Container.dispatchEventImpl(Container.java:2085)
>>> at java.awt.Window.dispatchEventImpl(Window.java:2478)
>>> at java.awt.Component.dispatchEvent(Component.java:4482)
>>> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
>>> at java.awt.EventQueue.access$000(EventQueue.java:85)
>>> at java.awt.EventQueue$1.run(EventQueue.java:603)
>>> at java.awt.EventQueue$1.run(EventQueue.java:601)
>>> at java.security.AccessController.doPrivileged(Native Method)
>>> at
>>>
>> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
>>> at
>>>
>> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
>>> at java.awt.EventQueue$2.run(EventQueue.java:617)
>>> at java.awt.EventQueue$2.run(EventQueue.java:615)
>>> at java.security.AccessController.doPrivileged(Native Method)
>>> at
>>>
>> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
>>> at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
>>> at
>>>
>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
>>> at
>>>
>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
>>> at
>>>
>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
>>> at
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
>>> at
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
>>> at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>>>
>>> Then it behaves like described in Alessandros message from October 2013
>> on
>>> this list:
>>>
>>> "...the selection is not inserted. On the main ImageJ panel there is an
>>>> indication "Scaling Image" with three asterisks moving left-right and
>> I'm
>>>> assuming that the software is trying to scale the image in order to fit
>> it
>>>> into the frame but even after one hour, nothing happens."
>>>>
>>> I am using an up to date FIJI on Win7-32, no difference on another
>> machine
>>> with the 64 bit version. Only an older Version of FIJI last updated March
>>> 2014 still has FigureJ working. I tried manually adding imagescience.jar
>> to
>>> the plugins folder (as suggested by Jerome in reply to Alessandro in
>> 2013)
>>> but no difference.
>>> Any hints?
>>> Christian
>>>
>>> --
>>> ---
>>> Christian Goosmann
>>> Mikroskopie
>>> Max-Planck-Institut für Infektionsbiologie
>>> Campus Charité Mitte
>>> Charitéplatz 1
>>> 10117 Berlin
>>> Tel.: +49 30 28460 388
>>>
>>> --
>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>
>>
>>
>> --
>> Jerome Mutterer
>> CNRS - Institut de biologie moléculaire des plantes
>> 12, rue du Général Zimmer
>> 67084 Strasbourg Cedex
>> www.ibmp.cnrs.fr
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html