Adjust image filters with TraKEM2

Posted by L'assegnista on Feb 15, 2016; 2:19pm
URL: http://imagej.273.s1.nabble.com/Adjust-image-filters-with-TraKEM2-tp5015635.html

Dear List,
I'm using TrakEM2 to reconstruct bundles of nerve fibers from four channels
confocal images ( a huge serial section reconstruction). As suggested by
Stephan Saalfeld (some yeras ago!) I imported the channels as separate
8-bit patches, applyed a LUT with "adjust image filters" and set the
composite mode to Add. However if I close and re-open the project the color
of the LUTs turns to gray and I have to set everithing again and wait the
(long) regeneration of the minimaps. Moreover, since the RAM is apparently
not released after the process (running the garbage collector is
ineffective) scrolling through the sections for annotation become very
slow. Is this a bug? Are there alterantive ways to change the LUT of the
channels?

Thank you

Federico

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Federico Luzzati, PhD
Assistant Professor
University of Turin,
Dept. LIfe Sciences and Systems Biology (DBIOS)
Via Accademia Albertina, 13 - 10123 Torino - IT

Researcher at
Neuroscience Institute Cavalieri Ottolenghi (NICO)
Regione Gonzole, 10 - 10043 Orbassano (To) - IT

tel. [phone]/ -6631
http://www.nico.ottolenghi.unito.it/index.php/it/adult-neurogenesis

Sostieni con il tuo 5xmille il NICO e la ricerca sulle malattie
neurodegenerative
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dell'Università"
CF 97564560015

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