Re: Watershed on Image Sequences
Posted by
Thomas Boudier-4 on
Mar 11, 2016; 7:20am
URL: http://imagej.273.s1.nabble.com/Watershed-on-Image-Sequences-tp5015844p5015847.html
Dear Shreya,
Looks you want to do a 3D watershed, I would then suggest for you to
have a look to :
http://imagej.net/Classic_Watershedor
http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:3d_spots_segmentation:startBest,
Thomas
On 11/03/2016 07:51, Shreya Kanakiya wrote:
> I have microCT scans of basalt rock and wish to characterize their pore geometry. For the same I have thresholded the pores. Since the pores are connected, I wish to perform watershed before calculating the circularity, surface area and volume of pores. I tried using the 'Watershed Irregular Features' function in Biovoxxel toolbox of Fiji but it allows to perform watershed on one image at a time. Is there a way I could perform it on image sequences ?
>
> Thanks for your time.
>
> Regards,
> Shreya
>
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Thomas Boudier, Associate Professor, UPMC,
Université Pierre et Marie Curie, Paris, France.
BioInformatics Institute (BII)/IPAL, Singapore.
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