Re: Index of hexagonality?

Posted by cilia huang on Mar 29, 2016; 5:15am
URL: http://imagej.273.s1.nabble.com/Index-of-hexagonality-SOLVED-tp5013442p5016016.html

Hi,

I'm glad that I found this post. I'm trying to do exactly the same type of analysis so I installed the toolbox and the macro you provided. But somehow I still couldn't get the results right (for example I always get many cells with >40 edges/neighbors). Could you please let me know the steps to process the images to reach the correct measurements? I would start with a regular RGB image opened in Fiji, adjust threshold, run the macro to outline hexagon ect, and then run the "neighbor analysis" in the toolbox. I choose "Voronoi" as the type of analysis. It doesn't seem to matter how much I enter for "neighborhood radius" and the results are always screwed. Any advice would be much appreciated!

Cheers,
Hippo