Re: Index of hexagonality? - SOLVED
Posted by
gankaku on
Mar 30, 2016; 11:24am
URL: http://imagej.273.s1.nabble.com/Index-of-hexagonality-SOLVED-tp5013442p5016027.html
Hi hippo,
for the binary image you posted I get the result as expected
It might be that the macro I provided for Mr_Sonky is not appropriate for
your type of images and results in many very small or tiny particles which
then obviously are included in the neighbor analysis.
If you could provide an image of yours I could have a look again.
@Mr_Sonky:
Actually, since you get the distribution plot you can just click on the
list button, transfer the list to excel and easily calculate the respective
ratio od percentage for each amount of neighbors you have in respect to the
overall number.
Cheers,
Jan
2016-03-29 18:12 GMT+02:00 cilia huang <
[hidden email]>:
> Hi,
>
> I'm glad that I found this post. I'm trying to do exactly the same type of
> analysis so I installed the toolbox and the macro you provided. But somehow
> I still couldn't get the results right (for example I always get many cells
> with >40 edges/neighbors). Could you please let me know the steps to
> process
> the images to reach the correct measurements? I would start with a regular
> RGB image opened in Fiji, adjust threshold, run the macro to outline
> hexagon
> ect, and then run the "neighbor analysis" in the toolbox. I choose
> "Voronoi"
> as the type of analysis. It doesn't seem to matter how much I enter for
> "neighborhood radius" and the results are always screwed. Any advice would
> be much appreciated!
>
> Cheers,
> Hippo
>
>
>
> --
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