Re: Index of hexagonality? - SOLVED

Posted by cilia huang on Mar 30, 2016; 11:17pm
URL: http://imagej.273.s1.nabble.com/Index-of-hexagonality-SOLVED-tp5013442p5016032.html

Hi Jan,

Thanks very much for getting back to me. I noticed that the unites of length for my images were in micron, and when I changed it to pixel I was able to get the proper results.

I'm hoping if you could help me figure out another technical issue with the macro. I have some cells that have vertexes with 4 or more edges (see attached images) and irregular shape, which is part of the phenotype I'm trying to analyze. I feel like the macro is having difficulties picking up those vertexes and gives me somewhat arbitrary results. For my control samples most cells are hexagon so there is no problem.  

In the images the circle marks the vertex, and the arrow points to a cell that I think has 4 neighbors...Let me know what you think.

Thanks very much