Posted by
Herbie on
Apr 13, 2016; 6:35pm
URL: http://imagej.273.s1.nabble.com/combine-data-from-multiple-profile-measurements-of-a-time-series-to-single-data-sheet-tp5016124p5016125.html
Christopher,
this looks like a task for a ImageJ-macro.
Here you find some docs for macro coding:
<
http://rsb.info.nih.gov/ij/developer/index.html>
1.
Make the appropriate selection in the first image (frame) of the stack
(it will be present in the other images too).
2.
While looping through the frames apply "getProfile" and append the array
of profile values to a text file by using "File.append(string, path)".
HTH
Herbie
::::::::::::::::::::::::::::::::::::::
Am 13.04.16 um 19:52 schrieb cpanders:
> I have a large time series (thousands of frames) of micrographs of a
> stationary structure that pulsates over time. I need to collect data from a
> single profile measurement (of a 100 pixel wide x ca. 4mm long perpendicular
> line) of each time point (frame) and combine into a single data sheet.
>
> This problem must have been solved previously but I could find no suitably
> applicable posts. I have used the ROI manager and multi measure to analyze
> the same images for other parameters but do not see a way to apply these
> tools to the "plot profile" measurement.
>
> Any formulas/scripts/macros that can be sent will be so gratefully
> appreciated!
>
>
>
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