http://imagej.273.s1.nabble.com/combine-data-from-multiple-profile-measurements-of-a-time-series-to-single-data-sheet-tp5016124p5016140.html
> Progress! I found a macro (copied below) that will capture the profile plot
> for each frame of the stack with one click, generating a plot window in
> which each frame has a page with its unique plot. However, the "list" and
> "save" options are absent.
> I now need to extract the x-y data for each page into a single sheet
> containing all plot data for the entire stack for further analysis in R.
>
>
> Here is the macro which works very nicely as far as it goes:
>
> // StackProfilePlot
> // This macro generates profile plots of all the images
> // in a stack and stores then in another stack.
>
> macro "Stack profile Plot" {
> ymin = 0;
> ymax = 255;
> saveSettings();
> if (nSlices==1)
> exit("Stack required");
> run("Profile Plot Options...",
> "width=400 height=200 minimum="+ymin+" maximum="+ymax+" fixed");
> setBatchMode(true);
> stack1 = getImageID;
> stack2 = 0;
> n = nSlices;
> for (i=1; i<n; i++) {
> showProgress(i, n);
> selectImage(stack1);
> setSlice(i);
> run("Plot Profile");
> run("Copy");
> w = getWidth; h = getHeight;
> close();
> if (stack2==0) {
> newImage("Plots", "8-bit", w, h, 1);
> stack2 = getImageID;
> } else {
> selectImage(stack2);
> run("Add Slice");
> }
> run("Paste");
> }
> setSlice(1);
> setBatchMode(false);
> restoreSettings();
> }
>
>
>
> --
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