it is very likely I will never have sufficient time. So it would be great
> Followup. This looks like an installation problem. I have FIJI
> installed. The Tudor installation instructions said to unpack their .zip
> file in the “ImageJ directory”. I don’t have one of those, so…I unpacked
> it elsewhere and got a “plugins” directory. That looked simple enough, so
> I simply moved the contents into the FIJI plugins directory.
>
> That spawned some complaints about duplicates. But, I pushed forward,
> just to see what happened. Predictably, I got the errors at the bottom of
> this e-mail.
>
> My current question is: given that I have the Tudor .zip file - how do I
> install it in my existing FIJI implementation?
>
> While I wait for an answer, or other inspiration, I’m going to clean out
> the Tudor stuff.
>
> Help, please. Clearly, my FIJI installation skills are minimal to
> nonexistent.
>
> My next question will probably be: I want “write out as DICOM” - and found
> “Send AS Dicom” as the closest thing. I see that what I got
> was “Send As Dicom Url”. That doesn’t look like what I want. Any clues
> on how to write an existing stack out in DICOM format? Please?
>
> ==================
> run: Send_As_Dicom Url:
> There was a problem with the class
> com.jgoodies.forms.builder.ButtonBarBuilder which can be found here:
> /Applications/Fiji.app/jars/jgoodies-forms-1.7.2.jar
> /Applications/Fiji.app/plugins/TudorDICOMLibs/forms-1.0.6.jar
> /Applications/Fiji.app/plugins/TudorDICOMLibs/loci_tools.jar
>
> WARNING: multiple locations found!
> java.lang.NoSuchMethodError:
> com.jgoodies.forms.builder.ButtonBarBuilder.addGlue()V
> at
> lu.tudor.santec.settings.SettingsPanel.<init>(SettingsPanel.java:180)
> at
> lu.tudor.santec.dicom.gui.DicomSettings.getSettingPanel(DicomSettings.java:28)
> at
> lu.tudor.santec.dicom.gui.DicomSettings.getDicomSettingsPlugin(DicomSettings.java:47)
> at Send_As_Dicom.run(Send_As_Dicom.java:63)
> at
> ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:263)
> at
> ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:112)
> at ij.IJ.runUserPlugIn(IJ.java:214)
> at ij.IJ.runPlugIn(IJ.java:176)
> at ij.Executer.runCommand(Executer.java:137)
> at ij.Executer.run(Executer.java:66)
> at java.lang.Thread.run(Thread.java:745)
>
> java.lang.NoSuchMethodException: Could not find method
> com.jgoodies.forms.builder.ButtonBarBuilder.addGlue()V
> There was a problem with the class
> com.jgoodies.forms.builder.ButtonBarBuilder which can be found here:
> /Applications/Fiji.app/jars/jgoodies-forms-1.7.2.jar
> /Applications/Fiji.app/plugins/TudorDICOMLibs/forms-1.0.6.jar
> /Applications/Fiji.app/plugins/TudorDICOMLibs/loci_tools.jar
>
> WARNING: multiple locations found!
> java.lang.NoSuchMethodError:
> com.jgoodies.forms.builder.ButtonBarBuilder.addGlue()V
> at
> lu.tudor.santec.settings.SettingsPanel.<init>(SettingsPanel.java:180)
> at
> lu.tudor.santec.dicom.gui.DicomSettings.getSettingPanel(DicomSettings.java:28)
> at
> lu.tudor.santec.dicom.gui.DicomSettings.getDicomSettingsPlugin(DicomSettings.java:47)
> at Send_As_Dicom.run(Send_As_Dicom.java:63)
> at
> ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:263)
> at
> ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:112)
> at ij.IJ.runUserPlugIn(IJ.java:214)
> at ij.IJ.runPlugIn(IJ.java:176)
> at ij.Executer.runCommand(Executer.java:137)
> at ij.Executer.run(Executer.java:66)
> at java.lang.Thread.run(Thread.java:745)
>
> at
> lu.tudor.santec.settings.SettingsPanel.<init>(SettingsPanel.java:180)
> at
> lu.tudor.santec.dicom.gui.DicomSettings.getSettingPanel(DicomSettings.java:28)
> at
> lu.tudor.santec.dicom.gui.DicomSettings.getDicomSettingsPlugin(DicomSettings.java:47)
> at Send_As_Dicom.run(Send_As_Dicom.java:63)
> at
> ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:263)
> at
> ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:112)
> at ij.IJ.runUserPlugIn(IJ.java:214)
> at ij.IJ.runPlugIn(IJ.java:176)
> at ij.Executer.runCommand(Executer.java:137)
> at ij.Executer.run(Executer.java:66)
> at java.lang.Thread.run(Thread.java:745)
> ==============================
> —
> Kenneth Sloan
>
[hidden email] <mailto:
[hidden email]>
> Vision is the art of seeing what is invisible to others.
>
> > On Mar 22, 2016, at 09:21, Kenneth Sloan <
[hidden email]>
> wrote:
> >
> >
> >
> > I have a colleague who has .czi images (Zeiss specific). He can read
> and process the files in FIJI.
> >
> > But, he wants to write them out (to feed to other programs) in either
> DICOM or .mrb format.
> >
> > His first attempt to use the “DICOM tudor plugin” (his term) failed - he
> gets unspecified exceptions in a popup).
> >
> > While I investigate that - are there any good solutions for:
> >
> > .czi —> DICOM , or
> > .czi —> .mrb ???
> >
> > All clues gratefully rented.
> >
> > —
> > Kenneth Sloan
> >
[hidden email] <mailto:
[hidden email]>
> > Vision is the art of seeing what is invisible to others.
> >
>
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>