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Re: grid stitching with fiji

Posted by fabrice senger-2 on Apr 26, 2016; 8:45pm
URL: http://imagej.273.s1.nabble.com/grid-stitching-with-fiji-tp5016030p5016244.html

thank you Curtis,

I will contact him directly,
Best,

Fabrice.

2016-04-26 19:02 GMT+02:00 Curtis Rueden <[hidden email]>:

> Hi Fabrice,
>
> > [WARNING] Ignoring unsupported output: result [java.lang.Boolean]
>
> This warning comes from the SciJava script framework -- part of ImageJ2. It
> means that the last computation of your script produced an array of values,
> which the system wants to display, but doesn't know how. It is harmless and
> can be safely ignored; it has nothing to do with stitching.
>
> > if I proceed anyway with stitching there's always some movement in z.
>
> Maybe if you ask on the ImageJ forum and mention the author
> (@StephanPreibisch), he will comment on it?
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - http://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Wed, Mar 30, 2016 at 10:21 AM, Fabrice Senger <[hidden email]
> >
> wrote:
>
> > Dera all I try to use the grid stitching plugin in FIJI but don't want to
> > move in Z.
> > Therefore I use the provided script as provided :
> >
> > mpicbg.stitching.GlobalOptimization.ignoreZ = true;
> >
> > but the log window gives me an exception :
> >
> > [WARNING] Ignoring unsupported output: result [java.lang.Boolean]
> >
> > and if I proceed anyway with stitching there's always some movement in z.
> >
> > Any suggestions ?
> >
> > Thank you,
> >
> > Fabrice.
> >
> > I run Fiji imageJ2.0.0-rc-43/1.50g; java 1.6.0_65 on a mac.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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