Re: grid stitching with fiji

Posted by ctrueden on Apr 26, 2016; 9:22pm
URL: http://imagej.273.s1.nabble.com/grid-stitching-with-fiji-tp5016030p5016245.html

Hi Fabrice,

> I will contact him directly,

I encourage you to use public communication channels whenever possible.
There are others (e.g. here at LOCI) who know some things about that
plugin, and we may be able to chime in with assistance. But not if you use
private mail.

Regarding the movement in Z, this issue sounds vaguely familiar, and I
thought Stephan even commented on it once, but off the top of my head I
cannot remember any additional details. And I don't have time to dig into
the archives thoroughly right now...

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Tue, Apr 26, 2016 at 3:57 PM, Fabrice Senger <[hidden email]>
wrote:

> thank you Curtis,
>
> I will contact him directly,
> Best,
>
> Fabrice.
>
> 2016-04-26 19:02 GMT+02:00 Curtis Rueden <[hidden email]>:
>
> > Hi Fabrice,
> >
> > > [WARNING] Ignoring unsupported output: result [java.lang.Boolean]
> >
> > This warning comes from the SciJava script framework -- part of ImageJ2.
> It
> > means that the last computation of your script produced an array of
> values,
> > which the system wants to display, but doesn't know how. It is harmless
> and
> > can be safely ignored; it has nothing to do with stitching.
> >
> > > if I proceed anyway with stitching there's always some movement in z.
> >
> > Maybe if you ask on the ImageJ forum and mention the author
> > (@StephanPreibisch), he will comment on it?
> >
> > Regards,
> > Curtis
> >
> > --
> > Curtis Rueden
> > LOCI software architect - http://loci.wisc.edu/software
> > ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> > Did you know ImageJ has a forum? http://forum.imagej.net/
> >
> >
> > On Wed, Mar 30, 2016 at 10:21 AM, Fabrice Senger <
> [hidden email]
> > >
> > wrote:
> >
> > > Dera all I try to use the grid stitching plugin in FIJI but don't want
> to
> > > move in Z.
> > > Therefore I use the provided script as provided :
> > >
> > > mpicbg.stitching.GlobalOptimization.ignoreZ = true;
> > >
> > > but the log window gives me an exception :
> > >
> > > [WARNING] Ignoring unsupported output: result [java.lang.Boolean]
> > >
> > > and if I proceed anyway with stitching there's always some movement in
> z.
> > >
> > > Any suggestions ?
> > >
> > > Thank you,
> > >
> > > Fabrice.
> > >
> > > I run Fiji imageJ2.0.0-rc-43/1.50g; java 1.6.0_65 on a mac.
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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