http://imagej.273.s1.nabble.com/grid-stitching-with-fiji-tp5016030p5016250.html
Thanks for the reply. From his first email though, it sounds like Fabrice
And it is not working as expected... any suggestions for debugging it?
> Hi Fabrice, yes, there is fix for that. See here on the documentation
> page:
>
http://imagej.net/Image_Stitching#I_want_to_ignore_the_movement_of_tiles_in_Z>
> Hope this helps,
> Stephan
> ---
>
> Dr. Stephan Preibisch
> Group Leader
>
> Berlin Institute of Medical Systems Biology of the MDC
> Building 89, 1.08b
>
> email:
[hidden email]
> web:
http://www.preibisch.net/ <
http://fly.mpi-cbg.de/preibisch>
>
> On 26 Apr 2016, at 23:25, Curtis Rueden <
[hidden email]> wrote:
>
> Hi Fabrice,
>
> > I will contact him directly,
>
> I encourage you to use public communication channels whenever possible.
> There are others (e.g. here at LOCI) who know some things about that
> plugin, and we may be able to chime in with assistance. But not if you use
> private mail.
>
> Regarding the movement in Z, this issue sounds vaguely familiar, and I
> thought Stephan even commented on it once, but off the top of my head I
> cannot remember any additional details. And I don't have time to dig into
> the archives thoroughly right now...
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect -
http://loci.wisc.edu/software> ImageJ2 lead, Fiji maintainer -
http://imagej.net/User:Rueden> Did you know ImageJ has a forum?
http://forum.imagej.net/>
>
> On Tue, Apr 26, 2016 at 3:57 PM, Fabrice Senger <
[hidden email]>
> wrote:
>
>> thank you Curtis,
>>
>> I will contact him directly,
>> Best,
>>
>> Fabrice.
>>
>> 2016-04-26 19:02 GMT+02:00 Curtis Rueden <
[hidden email]>:
>>
>> > Hi Fabrice,
>> >
>> > > [WARNING] Ignoring unsupported output: result [java.lang.Boolean]
>> >
>> > This warning comes from the SciJava script framework -- part of
>> ImageJ2. It
>> > means that the last computation of your script produced an array of
>> values,
>> > which the system wants to display, but doesn't know how. It is harmless
>> and
>> > can be safely ignored; it has nothing to do with stitching.
>> >
>> > > if I proceed anyway with stitching there's always some movement in z.
>> >
>> > Maybe if you ask on the ImageJ forum and mention the author
>> > (@StephanPreibisch), he will comment on it?
>> >
>> > Regards,
>> > Curtis
>> >
>> > --
>> > Curtis Rueden
>> > LOCI software architect -
http://loci.wisc.edu/software>> > ImageJ2 lead, Fiji maintainer -
http://imagej.net/User:Rueden>> > Did you know ImageJ has a forum?
http://forum.imagej.net/>> >
>> >
>> > On Wed, Mar 30, 2016 at 10:21 AM, Fabrice Senger <
>>
[hidden email]
>> > >
>> > wrote:
>> >
>> > > Dera all I try to use the grid stitching plugin in FIJI but don't
>> want to
>> > > move in Z.
>> > > Therefore I use the provided script as provided :
>> > >
>> > > mpicbg.stitching.GlobalOptimization.ignoreZ = true;
>> > >
>> > > but the log window gives me an exception :
>> > >
>> > > [WARNING] Ignoring unsupported output: result [java.lang.Boolean]
>> > >
>> > > and if I proceed anyway with stitching there's always some movement
>> in z.
>> > >
>> > > Any suggestions ?
>> > >
>> > > Thank you,
>> > >
>> > > Fabrice.
>> > >
>> > > I run Fiji imageJ2.0.0-rc-43/1.50g; java 1.6.0_65 on a mac.
>> > >
>> > > --
>> > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>> > >
>> >
>> > --
>> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>> >
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>
>
>