Posted by
Krs5 on
URL: http://imagej.273.s1.nabble.com/Counting-cells-within-measured-ROI-tp5016248p5016251.html
Dear Océane,
You might want to have a look at BioVoxxel Toolset (
http://www.biovoxxel.de/development/) , it includes Advanced Particle Analyzer or IJBlob + shape filter (
https://code.google.com/p/ijblob) which also allows advanced filtering on shape. Both include Aspect Ratio.
Kees
Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/aif-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Oceane
Sent: 27 April 2016 15:19
To:
[hidden email]
Subject: Counting structures within measured ROI
Dear all,
I am new to Image J and and I am slowly starting to realize the levels of complexity it offers.
I want to measure several ROIs in my picture, and manually count cells only within those who have a minor/major axis ratio >0.85.
I tried using the freehand selection tool and measurement command, but I can't seem to link the ROIs to the measurement, select the ones that are round enough, and then link my cell count to one particular ROI.
Is there a way for me to produce a single table containing the ROI measurements and the structure count ?
Thanks a LOT for your help!
Océane
--
View this message in context:
http://imagej.1557.x6.nabble.com/Counting-structures-within-measured-ROI-tp5016248.htmlSent from the ImageJ mailing list archive at Nabble.com.
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html