Re: Batch converting Simple Neurite Tracer files to images

Posted by Tiago Ferreira-2 on Apr 29, 2016; 3:33am
URL: http://imagej.273.s1.nabble.com/Batch-converting-Simple-Neurite-Tracer-files-to-images-tp5016271p5016275.html

Dear Volko,

On Apr 28, 2016, at 15:40, Volko Straub <[hidden email]> wrote:
> I was just wondering whether anybody knows a convenient way to do this automatically for a whole folder of trace files rather than having to manually load each trace file and create the image.


The Neuroanatomy update site[1] implements the "File>Import>Tracings (SWC/Traces)..." command that is macro recordable and should do just that.

NB: Some of the options in the "Render as" drop down menu, may not work as they require SNT v3.0.3, yet to be released.
    However, "Untagged skeleton" (equivalent to 'Make Line Stack' in SNT's UI), should work without issues.

[1] http://imagej.net/User:Neuroanatomy

-tiago
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