Re: Counting structures within measured ROI
Posted by
Olivier Burri on
URL: http://imagej.273.s1.nabble.com/Counting-cells-within-measured-ROI-tp5016248p5016279.html
Dear Oceane,
Unfortunately fitlering directly in the ROI manager the way you want is not a built-in option. What you do have left is the imageJ macro language.
You can download an example macro that does part of what you want (I do not know what you are doing for the actual measurement of your cells, but this might get you in the right track).
https://gist.github.com/lacan/73e6f82b889c4379520a11e32142aeadBest
Oli
-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Oceane Albert (PhD)
Sent: mercredi, 27 avril 2016 18:53
To:
[hidden email]
Subject: Re: Counting structures within measured ROI
Dear all,
Would there been a way to filter out the ROIs based on their aspect ratio directly from the ROI manager? I cannot rely on an automatic detection of the ROIs here, so I have to contour and measure them manually anyway. I just want to preselect those in which I am going to count my cells (i.e. the round ones).
Thanks a lot,
Océane
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