Posted by
Ignacio Arganda-Carreras-2 on
May 06, 2016; 12:51pm
URL: http://imagej.273.s1.nabble.com/instructions-for-Landmark-Correspondence-tp5016227p5016331.html
Hello Michael,
1) You need to use the Point Roi tool to manually set the landmarks between
your images or apply a plugin such as "Extract SIFT correspondences" (under
"Plugins > Feature Extraction") that calculates automatically the landmarks
for you.
2) Call Landmark Correspondences ("Plugins > Transform > Landmark
Correspondences")
3) Select as source the image to transform (the "moving" image) and as
template the reference (fixed) image.
4) The rest of parameters you select them based on your needs of
resolution, expected deformation, etc. Play with them until you're happy
with the results.
Cheers!
ignacio
On Mon, Apr 25, 2016 at 11:27 PM, Cammer, Michael <
[hidden email]> wrote:
> We are trying to use
http://imagej.net/Landmark_Correspondences to align
> thin sections that are warped.
>
> Does anyone have a step-by-step protocol for using this plugin? We
> haven't been able how to make this work.
>
> Thank you!
>
> =========================================================================
> Michael Cammer, Microscopy Core & Skirball Institute, NYU Langone Medical
> Center
> Cell: 914-309-3270 ** Office: Skirball 2nd
> Floor main office, back right **
>
http://ocs.med.nyu.edu/microscopy &
http://microscopynotes.com/>
>
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Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
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