Re: Mutliview Deconvolution PSF Format

Posted by nellypledge on
URL: http://imagej.273.s1.nabble.com/Mutliview-Deconvolution-PSF-Format-tp5016323p5016349.html

Thanks Stephan.

Am I correct in saying it's a a stack from a single view?

Also, can you advise on the pixel dimensions (e.g. 7x7x11 vs 15x15x9) both for user calibrated and auto generated?

Thanks
Neil

________________________________
From: [hidden email]
Sent: May 6, 2016 2:37 AM
To: Anthony, Neil
Cc: [hidden email]
Subject: Fwd: Mutliview Deconvolution PSF Format

Hi Anthony,

it should be 3d Tiff with the same calibration as the input data. It will apply the same transformation to the PSF(s) as to each respective stack that us deconvoled.

Hope this helps,
Stephan

Sent from my iPhone

Begin forwarded message:

From: Pavel Tomancak <[hidden email]<mailto:[hidden email]>>
Date: May 5, 2016 at 23:36:09 GMT+2
To: "[hidden email]<mailto:[hidden email]> Preibisch" <[hidden email]<mailto:[hidden email]>>
Subject: Fwd: Mutliview Deconvolution PSF Format


Begin forwarded message:

From: "Anthony, Neil" <[hidden email]<mailto:[hidden email]>>
Subject: Mutliview Deconvolution PSF Format
Date: May 5, 2016 7:53:45 PM GMT+02:00
To: [hidden email]<mailto:[hidden email]>
Reply-To: [hidden email]<mailto:[hidden email]>

Hi all,
Can anybody please advise on the correct format for the PSF that can be provided to the multiview reconstruction deconvolution plugin by Stephan Preibisch.
Also, how does the pixel size of that PSF change things?  Both if I let it find them from the reference beads and if I provide a PSF (assumed) zstack.

Thanks
Neil

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