Re: Analyze-Measure for multiple ROIs

Posted by gankaku on May 13, 2016; 4:49pm
URL: http://imagej.273.s1.nabble.com/Analyze-Measure-for-multiple-ROIs-tp5016423p5016430.html

Hi Sho,

You could actually take your binary image and run the function >Edit
>Selection >Create Selection.
Then you need to make sure that really your foreground is selected. If this
would not be the case you can invert the select using >Edit >Selection
>Make Inverse. Then you just need to run the normal Measure command and you
will get the cumulative data from the complete over all selection. The Mean
gives you then the over all average intensity and the integrated density is
the sum of all pixel intensities.

If I understood your question correctly this should give you the result you
are looking for.

Regards,
Jan
Am 13.05.2016 15:40 schrieb "Sho Fujisawa" <[hidden email]>:

> I may be losing my mind, but I thought we used to be able to...
>
> 1) Create multiple ROIs (usually with Analyze Particles)
> 2) Use Analyze-->Measure (instead of RoiManager-->Measure) in order to get
> CUMULATIVE data on all ROIs. I don't need data from individual ROIs.
>
> I can't do this any more, or I never could to begin with? What's a quick
> way to get cumulative data on all ROIs?
>
>
> Sho Fujisawa
> Sr. Digital Microscopist
> Molecular Cytology Core Facility
> Memorial Sloan-Kettering Cancer Center
> 417 E. 68th St.
> Zuckerman Room 1834
> New York NY 10065
> [phone]
> [phone]
>
>
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