Re: Plot profile macro through multiple slices

Posted by Jubok on May 20, 2016; 11:47am
URL: http://imagej.273.s1.nabble.com/Plot-profile-macro-through-multiple-slices-tp5016475p5016476.html

I have a working solution but I think it's not the most elegant one :

dir = getDirectory("Choose a directory :");
counter=1;

for (i=1; i <= nSlices(); i++) {
        setSlice(i);
        run("Plot Profile");
  Plot.getValues(x,y);
  run("Clear Results");
  for (j=0; j<x.length; j++) {
                setResult("x", j, x[j]);
                setResult("y", j, y[j]);
        }
        setOption("ShowRowNumbers", false);
  updateResults;
  saveAs("txt", dir+"slice_"+counter+".txt");
  counter+=1;
        run("Close");
        run("Close");
}

It needs to close the Plot and Results windows so I had to put "run("Close")" two times, it didn't work with "close()"

If you have suggestion to improve the code don't hesitate ! :)