Simple Neurite Tracer - Connecting existing branches

Posted by Straub, Volko A. (Dr.) on
URL: http://imagej.273.s1.nabble.com/Simple-Neurite-Tracer-Connecting-existing-branches-tp5016529.html

Dear All,

I have used Simple Neurite Tracer to trace neuronal morphologies. During
the analysis of the traces, I realised that some of the lower order side
branches are not correctly connected to their parent branch (must have
forgotten to press the branch modifier keys during the tracing). Is
there a simple/convenient way to connect two existing branches within
Simple Neurite Tracer (I don't seem to be able to find that option), or
perhaps an option to edit the trace files created by Simple Neurite Tracer.
On a related note, I was wondering whether there is a simple way to
access the path parameters such as start and end coordinates and path
length from a macro. I know that I can export them as a csv file, but it
seems a bit clunky to first export them as a csv file and then read the
parameters from there.
Any ideas/suggestions would be very much appreciated.

Thanks,
Volko

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