Process Image Series File as Virtual Stack

Posted by Sebastian Rhode-5 on
URL: http://imagej.273.s1.nabble.com/Process-Image-Series-File-as-Virtual-Stack-tp5016605.html

Hi,

I have a tile image (.czi). When I read this via BioFormats, every tile is treated as an distinct image series. So in case of a 10x10 Tile, one ends up with 100 image series. Since the file is quite large, I want to the following:

- load 1st image series from complete data set (as virtual stack?)
- process 1st series
- save 1st series
- loop the whole thing

As a result I would still need one big image data set that can be saved as on ome-tiff and that contains 100 image series. Can someone point me into the right direction?

Sebi

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