Re: Process Image Series File as Virtual Stack

Posted by lartaud marc on
URL: http://imagej.273.s1.nabble.com/Process-Image-Series-File-as-Virtual-Stack-tp5016605p5016622.html

Hi,
Have you try to apply stitching process in Zen before saving in czi
format ?
Marc

Le 07/06/2016 à 10:56, Sebastian Rhode a écrit :

> Hi,
>
> I have a tile image (.czi). When I read this via BioFormats, every tile is treated as an distinct image series. So in case of a 10x10 Tile, one ends up with 100 image series. Since the file is quite large, I want to the following:
>
> - load 1st image series from complete data set (as virtual stack?)
> - process 1st series
> - save 1st series
> - loop the whole thing
>
> As a result I would still need one big image data set that can be saved as on ome-tiff and that contains 100 image series. Can someone point me into the right direction?
>
> Sebi
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html