Re: Colocalization test and Macro

Posted by ctrueden on Jun 16, 2016; 3:24pm
URL: http://imagej.273.s1.nabble.com/Colocalization-test-and-Macro-tp5016660p5016665.html

Hi all,

> As soon as this gets merged and uploaded to the Fiji update site, the
> Colocalization Test plugin should be macro recordable.

The fix has been merged, released and uploaded. Let us know how it works
for you.

Regards,
Curtis

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Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
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On Thu, Jun 16, 2016 at 10:04 AM, Jan Eglinger <[hidden email]>
wrote:

> Hi Olivier,
>
> as Gabriel says (and the error message suggests), it's a problem having
> the keyword "channel" twice in the call to "Colocalization Test".
>
> This needs to be fixed by the maintainers of the Colocalization Test
> plugin [1]. I submitted a pull request:
> https://github.com/fiji/Colocalisation_Analysis/pull/47/files
>
> As soon as this gets merged and uploaded to the Fiji update site, the
> Colocalization Test plugin should be macro recordable. Please note that the
> Coloc_2 plugin is meant to replace the other colocalization plugins in the
> future and is being actively developed.
>
> Hope that helps.
> Jan
>
> [1]:
> https://github.com/fiji/Colocalisation_Analysis/blob/master/src/main/java/Colocalisation_Test.java#L175
>
>
>
>
> On 16.06.2016 16:44, Gabriel Landini wrote:
>
>> On Thursday 16 Jun 2016 14:33:13 you wrote:
>>
>>> Dear ImageJ list,
>>>
>>> I am trying to call "Colocalization test" function from a Macro but I am
>>> not
>>> able to.
>>>
>>> "Colocalization test" function is working fine, I get expected results
>>> when
>>> I use it manually (Analyze > Colocalization > Colocalization test). But
>>> if
>>> the Macro recorder is open, in order to get the macro command line, when
>>> I
>>> run "colocalization test" function, I get an error message from the
>>> recorder :
>>>
>>> Duplicate keyword :
>>> Command "Colocalization Test"
>>> Keyword "Channel"
>>>
>>
>> I think that this is because there are several "Channel" parameters in the
>> dialog, so it becomes ambiguous. Change the names of the parameters so
>> there
>> are no clashes.
>>
>> Cheers
>>
>> Gabriel
>>
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>>
>>
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