Posted by
Leroy Olivier on
Jun 16, 2016; 3:37pm
URL: http://imagej.273.s1.nabble.com/Colocalization-test-and-Macro-tp5016660p5016668.html
Dear Curtis, Jan and Gabriel,
This is now working perfectly fine.
Thank you so much !
Best Regards,
Olivier
-----Message d'origine-----
De : Jan Eglinger [mailto:
[hidden email]]
Envoyé : jeudi 16 juin 2016 17:41
À :
[hidden email]; Leroy Olivier
Objet : Re: Colocalization test and Macro
Hi all,
On 16.06.2016 17:04, Jan Eglinger wrote:
> This needs to be fixed by the maintainers of the Colocalization Test
> plugin [1]. I submitted a pull request:
>
https://github.com/fiji/Colocalisation_Analysis/pull/47/filesThanks to Curtis Rueden, the fix is now merged and available by running 'Help > Update...' in Fiji.
When you now run Colocalization Test, the recorder records:
*****
run("Colocalization Test", "channel_1=green.tif channel_2=red.tif roi=None randomization=[Costes approximation (smoothed noise)]
pixel=0.04 channel_2_wavelength=520 na=1.40 iterations=25 psf_radius=10");
*****
Cheers
Jan
>
>
> On 16.06.2016 16:44, Gabriel Landini wrote:
>> On Thursday 16 Jun 2016 14:33:13 you wrote:
>>> Dear ImageJ list,
>>>
>>> I am trying to call "Colocalization test" function from a Macro but
>>> I am not able to.
>>>
>>> "Colocalization test" function is working fine, I get expected
>>> results when I use it manually (Analyze > Colocalization >
>>> Colocalization test).
>>> But if
>>> the Macro recorder is open, in order to get the macro command line,
>>> when I run "colocalization test" function, I get an error message
>>> from the recorder :
>>>
>>> Duplicate keyword :
>>> Command "Colocalization Test"
>>> Keyword "Channel"
>>
>> I think that this is because there are several "Channel" parameters
>> in the dialog, so it becomes ambiguous. Change the names of the
>> parameters so there are no clashes.
>>
>> Cheers
>>
>> Gabriel
>>
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html