Posted by
ctrueden on
URL: http://imagej.273.s1.nabble.com/Simple-Neurite-Tracer-Connecting-existing-branches-tp5016529p5016671.html
Hi Volko,
My lab does not use this plugin, so I do not know the answers to your
questions. I'm sorry to say that the Simple Neurite Tracer is largely
unmaintained now, since the original author left the ImageJ community. The
core Fiji team is able to review and accept suggested code changes proposed
by others, but we unfortunately do not have time to fix bugs ourselves.
If any developers in the community are familiar with the Simple Neurite
Tracer and want to adopt it, please post on the ImageJ Forum—that would be
most welcome indeed.
Regards,
Curtis
--
Curtis Rueden
LOCI software architect -
http://loci.wisc.edu/softwareImageJ2 lead, Fiji maintainer -
http://imagej.net/User:RuedenDid you know ImageJ has a forum?
http://forum.imagej.net/On Thu, May 26, 2016 at 1:11 AM, Volko Straub <
[hidden email]> wrote:
> Dear All,
>
> I have used Simple Neurite Tracer to trace neuronal morphologies. During
> the analysis of the traces, I realised that some of the lower order side
> branches are not correctly connected to their parent branch (must have
> forgotten to press the branch modifier keys during the tracing). Is there a
> simple/convenient way to connect two existing branches within Simple
> Neurite Tracer (I don't seem to be able to find that option), or perhaps an
> option to edit the trace files created by Simple Neurite Tracer.
> On a related note, I was wondering whether there is a simple way to access
> the path parameters such as start and end coordinates and path length from
> a macro. I know that I can export them as a csv file, but it seems a bit
> clunky to first export them as a csv file and then read the parameters from
> there.
> Any ideas/suggestions would be very much appreciated.
>
> Thanks,
> Volko
>
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