Re: Looking for tissue segmentation plugin

Posted by Michael Schmid on Jul 05, 2016; 12:11pm
URL: http://imagej.273.s1.nabble.com/Looking-for-tissue-segmentation-plugin-tp5016812p5016814.html

Hi Ard,

maybe the Versatile Wand tool plugin may be useful for you?
 
http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:versatile_wand:start

To use it, best click at one point with a 'typical' color and then open
the options to try how the parameters should be adjusted (you will get a
preview of the selection)

Michael
________________________________________________________________
On 2016-07-05 13:34, A. Jonker wrote:

> In Fiji we have the Color Inspector 3D, the Cell Counter plugin,
> Color Deconvolution and the Color Segmentation option. I'm looking
> for a combo of these; to interactively decide that pixels belong to
> one group of tissue or to another. The Color Segmentation is not
> fine-grained enough as the tissue has non-adjacent colour properties,
> the Color Deconvolution only allows one continuous ROI to be analysed
> (yes, I know, I should have one color in the image to find new
> vectors).
>
> The effect I'm after is a bit like the magic wand selector of
> Photoshop, where one can shift-click a color or alt-click a colour to
> respectively add or remove pixels in an image that have certain
> colour ranges. The colour ranges I'm thinking of are alreay available
> in the Display Mode: Histogram of the Color Inspector. Clicking the
> balls in the 3D cube should ideally be converted to a tissue type
> selection.
>
> Is such a utility available or could someone give some pointers in
> this field? http://www.f4.fhtw-berlin.de seems to be off line
> currently.
>
> Ard ________________________________
>
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