Posted by
Aryeh Weiss on
Aug 10, 2016; 6:54pm
URL: http://imagej.273.s1.nabble.com/questions-about-grid-stitching-tp5016991.html
I have two questions about this plugin:
First - I have a set of XYZ stacks that I am stitching.
I would like the stitching to be done only in the xy directions, but not
in Z. That is, even if the stitcher thinks that a stack should be
shifted in Z, I do not want that to happen. I though that selecting the
"Ignore Z- stage position" would do this, but it turns out that even
with that option stacks are shifted in the Z direction.
Is there a way to prevent this. I have the ROIs in the ROI manager, but
I do not want to write my own fusion program to fuse the stacks.
Second - when I select "downsample tiles", the stitching does something
strange. It puts all of my grid of tiles in on row. When I do nto
down-sample, with all else the same, it works as expected. Do I
misunderstand what the downsample option does? I was trying ot use it to
same space on a really large stitched image.
Tnx in advance for your help,
--aryeh
--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel
Ph: 972-3-5317638
FAX: 972-3-7384051
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