http://imagej.273.s1.nabble.com/Problem-to-save-as-DICOM-with-Tudor-dicom-tools-tp5017013p5017021.html
We have designed it to re-write in DICOM modified PET and CT series. We
> Dear Herbie,
>
> as Curtis nicely explained, the problem is caused by the presence of two
> different versions of the same library. In this case the DICOM tools and
> the Bio-Formats plugins both depend on `jgoodies-forms` but on different
> versions of those.
>
> As "core ImageJ" does not ship this library, users who are using ImageJ
> without any additional plugins will not have the problem.
> However, it will likely occur for anyone who uses Bio-Formats and wants to
> install the DICOM tools.
>
> I agree with Curtis that if DICOM Tools were provided by an update site,
> we could make installation much easier for users by ensuring that version
> skews like this one do not happen.
>
> Cheers,
> Jan
>
>
>
>
> On 16.08.2016 10:27, Herbie wrote:
>
>> Just curious,
>>
>> is this a Fiji-problem or does it hold for plain ImageJ as well?
>>
>> Good day
>>
>> Herbie
>>
>> :::::::::::::::::::::::::::::::::::::::::::
>> Am 15.08.16 um 20:59 schrieb Curtis Rueden:
>>
>>> Hi Daniel,
>>>
>>> There was a problem with the class
>>>> com.jgoodies.forms.builder.ButtonBarBuilder which can be found here:
>>>> /home/daniel/programs/Fiji.app/jars/jgoodies-forms-1.7.2.jar
>>>> /home/daniel/programs/Fiji.app/plugins/TudorDICOMLibs/forms-1.0.6.jar
>>>>
>>>
>>> This means that the Tudor DICOM Tools are shipping with a different (and
>>> incompatible) version of the library called JGoodies Forms.
>>>
>>> As a workaround, you can try removing jars/jgoodies-forms-1.7.2.jar
>>> from in
>>> your local installation; the one that Tudor DICOM Tools needs is in
>>> plugins/TudorDICOMLibs/forms-1.0.6.jar.
>>>
>>> Is it maybe possible somehow to tell the plugin to look into its "own"
>>>> forms.jar instead of the preinstalled file (Fiji.app/jars/jgoodies-
>>>> forms-1.7.2.jar)?
>>>>
>>>
>>> Unfortunately not. At least, not without a major change to the ImageJ
>>> infrastructure, which would make it more complex.
>>>
>>> The best way to fix this is for Tudor DICOM Tools to be structured as an
>>> ImageJ update site compatible with ImageJ2 and Fiji. I have suggested
>>> this
>>> path to the authors in the past, but they ignore these mailing list
>>> threads
>>> [1, 2]. Ways forward include:
>>>
>>> - email the Tudor DICOM Tools authors directly to renew the request
>>> - set up a third party update site for the Tudor DICOM Tools,
>>> maintained by
>>> someone in the community
>>>
>>> See also:
>>>
http://imagej.net/DICOM>>>
>>> It would be great, if you get the Tudor DICOM Tools working, if you could
>>> at least edit the above wiki page with hints on how to do so.
>>>
>>> Regards,
>>> Curtis
>>>
>>> --
>>> Curtis Rueden
>>> LOCI software architect -
http://loci.wisc.edu/software>>> ImageJ2 lead, Fiji maintainer -
http://imagej.net/User:Rueden>>> Did you know ImageJ has a forum?
http://forum.imagej.net/>>>
>>> [1]
http://imagej.1557.x6.nabble.com/oib-to-DICOM-tt5016100.html>>> #a5016154
>>> [2]
>>>
http://imagej.1557.x6.nabble.com/czi-DICOM-or-mrb-tp5015970p5016237.html>>>
>>>
>>> On Mon, Aug 15, 2016 at 4:47 AM, Daniel Hornung
>>> <
[hidden email]>
>>> wrote:
>>>
>>> Hi everyone,
>>>>
>>>> I am trying to save tiff stacks as DICOM, and downloaded and
>>>> installed the
>>>> latest Tudor DICOM Tools (version 1.9.30).
>>>>
>>>> When calling File > Save as > Save DICOM, I get the following error:
>>>>
>>>> ==========
>>>>
>>>> There was a problem with the class com.jgoodies.forms.builder.But
>>>> tonBarBuilder
>>>> which can be found here:
>>>> /home/daniel/programs/Fiji.app/jars/jgoodies-forms-1.7.2.jar
>>>> /home/daniel/programs/Fiji.app/plugins/TudorDICOMLibs/forms-1.0.6.jar
>>>>
>>>> WARNING: multiple locations found!
>>>> java.lang.NoSuchMethodError:
>>>> com.jgoodies.forms.builder.ButtonBarBuilder.addGlue()V
>>>> at Save_As_Dicom.setup(Save_As_Dicom.java:100)
>>>> at ij.plugin.filter.PlugInFilterR
>>>> unner.<init>(PlugInFilterRunne
>>>> r.java:48)
>>>> at ij.IJ.runUserPlugIn(IJ.java:219)
>>>> at ij.IJ.runPlugIn(IJ.java:181)
>>>> at ij.Executer.runCommand(Executer.java:137)
>>>> at ij.Executer.run(Executer.java:66)
>>>> at java.lang.Thread.run(Thread.java:662)
>>>>
>>>> java.lang.NoSuchMethodException: Could not find method
>>>> com.jgoodies.forms.builder.ButtonBarBuilder.addGlue()V
>>>> There was a problem with the class com.jgoodies.forms.builder.But
>>>> tonBarBuilder
>>>> which can be found here:
>>>> /home/daniel/programs/Fiji.app/jars/jgoodies-forms-1.7.2.jar
>>>> /home/daniel/programs/Fiji.app/plugins/TudorDICOMLibs/forms-1.0.6.jar
>>>>
>>>> WARNING: multiple locations found!
>>>> java.lang.NoSuchMethodError:
>>>> com.jgoodies.forms.builder.ButtonBarBuilder.addGlue()V
>>>> at Save_As_Dicom.setup(Save_As_Dicom.java:100)
>>>> at ij.plugin.filter.PlugInFilterR
>>>> unner.<init>(PlugInFilterRunne
>>>> r.java:48)
>>>> at ij.IJ.runUserPlugIn(IJ.java:219)
>>>> at ij.IJ.runPlugIn(IJ.java:181)
>>>> at ij.Executer.runCommand(Executer.java:137)
>>>> at ij.Executer.run(Executer.java:66)
>>>> at java.lang.Thread.run(Thread.java:662)
>>>>
>>>> at Save_As_Dicom.setup(Save_As_Dicom.java:100)
>>>> at ij.plugin.filter.PlugInFilterR
>>>> unner.<init>(PlugInFilterRunne
>>>> r.java:48)
>>>> at ij.IJ.runUserPlugIn(IJ.java:219)
>>>> at ij.IJ.runPlugIn(IJ.java:181)
>>>> at ij.Executer.runCommand(Executer.java:137)
>>>> at ij.Executer.run(Executer.java:66)
>>>> at java.lang.Thread.run(Thread.java:662)
>>>>
>>>>
>>>> ==========
>>>>
>>>> My Fiji distribution is up-to-date. Can anyone reproduce this
>>>> problem, or
>>>> knows a workaround?
>>>>
>>>> Is it maybe possible somehow to tell the plugin to look into its "own"
>>>> forms.jar instead of the preinstalled file (Fiji.app/jars/jgoodies-
>>>> forms-1.7.2.jar)?
>>>>
>>>> Note that the plugin also came with its own version of the 3D viewer and
>>>> loci_tools.jar, which I renamed to prevent naming conflicts at startup.
>>>>
>>>> Thanks!
>>>> Daniel
>>>>
>>>>
> --
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