Login  Register

Re: Segment phase contrast image

Posted by Jan Eglinger on Aug 17, 2016; 2:26pm
URL: http://imagej.273.s1.nabble.com/Segment-phase-contrast-image-tp5017034p5017035.html

Hi Laurent,

have you tried Weka Trainable Segmentation to do this?

http://imagej.net/Trainable_Weka_Segmentation

Here are a few threads on the forum discussing that:

http://forum.imagej.net/t/analysis-of-aggregates/303?u=imagejan
http://forum.imagej.net/t/segmentation-of-polymer-fibres-nonwovens-on-optical-microscopy-images/2313?u=imagejan
http://forum.imagej.net/t/image-segmentation/2359?u=imagejan

Hope that helps,
Jan


On 17.08.2016 15:55, Laurent.guerard wrote:

> Hi all,
>
> I've been trying to segment a phase contrast image with no real success
> these past weeks.
> The images are time series in order to track the movement of these cells.
> Would any of you have ideas on how to it ?
>
> Here is an example :
> <http://imagej.1557.x6.nabble.com/file/n5017034/TiledImage_T00_Trans.png>
>
> There are 2 main problems with the images though :
> 1. There are dead cells/debris in the images which are very bright and might
> cause problems in the segmentation
> 2. The cells are really confluent, making it also difficult to separate
> close cells.
>
> Any help would be welcome :)
>
> Thanks.
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html