Stitching suggestions

Posted by Kenton Arkill on Aug 18, 2016; 10:38am
URL: http://imagej.273.s1.nabble.com/Stitching-suggestions-tp5017052.html

Hi I'm using fiji and have roughly 50 (transmission electron ) images in
each grid. However, the microscope misses the odd one (no idea why) so the
'grid/collection' stitching does not work as it is missing some but only a
few numbers.
I use the 'stitch directory of images, unknown configuration' but with
50ish images take a long time and makes mistakes.

Is there a suggested work around to use the grid sequence? for example put
in blank images where there is one missing, and if so should I put in a
black, white or mean image?

Thanks for suggestions
Kenton

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