Re: Segment phase contrast image

Posted by Majurski, Michael Paul (Fed) on Aug 18, 2016; 2:30pm
URL: http://imagej.273.s1.nabble.com/Segment-phase-contrast-image-tp5017034p5017059.html

Hmm.

If you have installed the correct version of the MCR, per my understanding it should work. Maybe its finding a newer version of Matlab and trying to help you out by defaulting to the newer one?

If you do have a matlab license try running from source.

Porting fogbank to a Fiji plugin has been on my todo list (fairly far down) for awhile. If I do get it ported to Java as a Fiji plug I will make an announcement here which you might see.

I am not really familiar with any other automatic phase-contrast single cell segmentation Fiji plugin tools. Others on this list might have other ideas.

~Michael



-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Laurent Guerard
Sent: Thursday, August 18, 2016 09:54
To: [hidden email]
Subject: Re: Segment phase contrast image

Hi Michael,

I only tried the executable so far but I double click on it I get an error message saying

"Could not find version 8.1 of the MCR. Attempting to load mclmcrrt8_1.dll. Please install the correct version of the MCR. Contact your vendor if you do not have an installer for the MCR."

I tried downloading MCR 8.1 from Matlab's site but I get the same error everytime and when I check the version that Matlab is using it says 9 which corresponds to Matlab 2015b that I'm using.

I'll also try with the source code to see if it possible to make it work but I'm looking at possibly building a pipeline in Fiji to do batch processing so I'm also looking at possible plugins and/or macros.

Thanks for your help !

*------------------
*

*Laurent Guerard*


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