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Re: Separate ROI in each stack slice

Posted by Madhoosudan on Aug 19, 2016; 3:18pm
URL: http://imagej.273.s1.nabble.com/Separate-ROI-in-each-stack-slice-tp5017040p5017083.html

Hi Thank you Curtis for the reply. Now with the use of ROI manager I can
select different ROI in different slices of the stack. However, Once I
could do it without even going to ROI and pressing t every time. Is there
any global setting for this.


​Regards,


​Madhoosudan Patil,
Post Doctoral Fellow,
​Skaggs School of Pharmacy,​

​Anschutz Medical Campus,​
​University of Colorado, Denver, USA.
​Ph.: 001 (720) 975-4360
E-Mail: [hidden email]

On 17 August 2016 at 11:48, Curtis Rueden <[hidden email]> wrote:

> Hi Madhoosudan,
>
> To work with multiple ROIs, including slice-specific ROIs, use the ROI
> Manager. Press the T key to add your current selection. Then draw
> additional selections, pressing T each time.
>
> See:
> * https://imagej.net/docs/guide/146-30.html#sub:ROI-Manager...
> * http://imagej.github.io/presentations/fiji-segmentation/#/
> * http://imagej.net/Segmentation
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - http://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Wed, Aug 17, 2016 at 11:53 AM, madhoosudan patil <
> [hidden email]> wrote:
>
> > Hellow,
> > I want to define separate ROI for each individual slice in the imported
> > image stack of around 31 images. I could do it once but again I am not
> sure
> > I am not able to select the separate ROI for each image. Whenever I draw
> > ROI for one image it by default gets applied to all the images and
> clicking
> > on any image outside the ROI will remove ROI from all images. Could
> anyone
> > help me in this regards.
> >
> > Thanks.
> >
> >
> > ​
> > ​Regards,
> >
> >
> > ​Madhoosudan Patil,
> > Post Doctoral Fellow,
> > ​Skaggs School of Pharmacy,​
> >
> > ​Anschutz Medical Campus,​
> > ​University of Colorado, Denver, USA.
> > ​Ph.: 001 (720) 975-4360
> > E-Mail: [hidden email]
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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