Re: Saving the ROI in JPEG....

Posted by ctrueden on Aug 19, 2016; 4:24pm
URL: http://imagej.273.s1.nabble.com/Saving-the-ROI-in-JPEG-tp5017084p5017087.html

Hi Madhoosudan,

It is possible to embed ROIs into a saved TIFF.

After adding your ROIs to the ROI manager, clear the selection and then run:

Image > Overlay > From ROI Manager

Then save as TIFF.

When you reopen this TIFF, the ROIs will come back in as an overlay. You
can then restore them to the ROI Manager for individual processing using:

Image > Overlay > To ROI Manager

Maybe someone knows an easier way, but this approach should work.

However, note that when testing this feature, I noticed a bug where the
hyperstack position of ROIs might be altered in some circumstances. I filed
an bug report: https://github.com/imagej/imagej1/issues/21.

Regards,
Curtis

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Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
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On Fri, Aug 19, 2016 at 10:24 AM, madhoosudan patil <
[hidden email]> wrote:

> Hi I am working on the image where I am assigning the efferent ROI to
> measure it. After I am done with this I want to save the image along with
> selected ROI which can be opened in any image viewing application. I tried
> saving the image as tiff. But in that case I can only see the ROI if I
> reopen the image in ImageJ but not in any other default widows
> applications.
>
> --
> ​
> ​Regards,
>
>
> ​Madhoosudan Patil,
> Post Doctoral Fellow,
> ​Skaggs School of Pharmacy,​
>
> ​Anschutz Medical Campus,​
> ​University of Colorado, Denver, USA.
> ​Ph.: 001 [phone]
> E-Mail: [hidden email]
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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