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Re: Segment phase contrast image

Posted by Ignacio Arganda-Carreras-2 on Aug 22, 2016; 10:56am
URL: http://imagej.273.s1.nabble.com/Segment-phase-contrast-image-tp5017034p5017093.html

Another option would be the Morphological Segmentation plugin available
with MorphoLibJ: http://imagej.net/Morphological_Segmentation

On Thu, Aug 18, 2016 at 4:30 PM, Majurski, Michael Paul (Fed) <
[hidden email]> wrote:

> Hmm.
>
> If you have installed the correct version of the MCR, per my understanding
> it should work. Maybe its finding a newer version of Matlab and trying to
> help you out by defaulting to the newer one?
>
> If you do have a matlab license try running from source.
>
> Porting fogbank to a Fiji plugin has been on my todo list (fairly far
> down) for awhile. If I do get it ported to Java as a Fiji plug I will make
> an announcement here which you might see.
>
> I am not really familiar with any other automatic phase-contrast single
> cell segmentation Fiji plugin tools. Others on this list might have other
> ideas.
>
> ~Michael
>
>
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Laurent Guerard
> Sent: Thursday, August 18, 2016 09:54
> To: [hidden email]
> Subject: Re: Segment phase contrast image
>
> Hi Michael,
>
> I only tried the executable so far but I double click on it I get an error
> message saying
>
> "Could not find version 8.1 of the MCR. Attempting to load
> mclmcrrt8_1.dll. Please install the correct version of the MCR. Contact
> your vendor if you do not have an installer for the MCR."
>
> I tried downloading MCR 8.1 from Matlab's site but I get the same error
> everytime and when I check the version that Matlab is using it says 9 which
> corresponds to Matlab 2015b that I'm using.
>
> I'll also try with the source code to see if it possible to make it work
> but I'm looking at possibly building a pipeline in Fiji to do batch
> processing so I'm also looking at possible plugins and/or macros.
>
> Thanks for your help !
>
> *------------------
> *
>
> *Laurent Guerard*
>
>
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>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencia de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : +34 943 01 73 25
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

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