Re: Stitching in batch

Posted by Rainer M. Engel on Oct 13, 2016; 1:21pm
URL: http://imagej.273.s1.nabble.com/Stitching-in-batch-tp5017365p5017366.html

Hey Mauricio,

you're opening the whole folder (every image), but you are using only
the first 25, reading your macro.

Even if it's very slow. Disable the batchMode to see what's happening.

I would integrate a counter, which could be the result of your 5x5 tile.
So everytime 25 images are open, do the stitch, write, close, go on..

Regards,
Rainer



Am 13.10.2016 um 14:55 schrieb Mauricio Aguirre Morales:

> Dear Community,
>
> I am trying to stitch 25 images in a 5x5 tile. I have written these
> lines but the script is only processing the first 25 images in a folder
> where 100 images are saved. Any hint on how to solve this problem is
> highly appreciated!
>
> macro "Stitching in imageJ" {
> dir = getDirectory("Choose an input directory ");
> dir2 = getDirectory("Choose a destination directory ");
> list = getFileList(dir);
> setBatchMode(true);
> for (i=0; i<list.length; i++) {
>   path = dir+list[i];
>   showProgress(i, list.length);
>   if (!File.isDirectory(path)) {
>   open(path);
> //
> //....
> run("Grid/Collection stitching", "type=[Grid: row-by-row] order=[Right &
> Down                ] grid_size_x=5 grid_size_y=5 tile_overlap=5
> first_file_index_i=1 directory=[C:\\Users\\Mauricio\\Desktop\\New
> folder\\] file_names={i}.jpg output_textfile_name=TileConfiguration.txt
> fusion_method=[Linear Blending] regression_threshold=0.30
> max/avg_displacement_threshold=2.50 absolute_displacement_threshold=3.50
> compute_overlap computation_parameters=[Save memory (but be slower)]
> image_output=[Fuse and display]");
> saveAs("TIFF", dir2+list[i]);
> //....
> //
> //wait(3000);
> //selectWindow("Summary");
> //save(pathsaveres);
> }
>
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>
>

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Rainer M. Engel
Pichelsdorferstr. 143
D-13595 Berlin

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