Re: What is the thing with "Test Block matching parameters"?

Posted by Christin Wittfoth on Oct 19, 2016; 2:35pm
URL: http://imagej.273.s1.nabble.com/What-is-the-thing-with-Test-Block-matching-parameters-tp5017422p5017423.html

Sorry, I forgot the snapshot...


Am 19.10.2016 um 16:33 schrieb Christin Wittfoth:

> Hi everyone,
>
> we try to find out how to do an elastic alignment but we despair of
> testing block matching parameters in TrakEM2. We are not sure how to
> interpret the results and to decide if we have found the right
> parameters. We attached one snapshot as example:
> - Is the size of the black area important? (smaller <-> bigger)
> - What do the colours mean?
> - How important is the blackness of the colours? (Compare the middle
> row and column which show bright colours but in complementary ones of
> the colour range)
> - We have read the parameters which are defined in pixels depend on
> the image size. But in which range can we test the parameters to get a
> successful alignment?
> - What does the layer scale mean and is depending on?
> - Can we use information out of the log? (We noticed the log name a
> "maximum local displacement", for example.)
>
> We are grateful for every help!
>
> Greetings,
> Christin & Tina
>

--
------------------------------------------------------------

M.Sc. Christin Wittfoth

Cytologie und Evolutionsbiologie
Universität Greifswald
Zoologisches Institut und Museum
Soldmannstrasse 23
Haus 6.1
D - 17487 Greifswald
Tel.: [phone]
Fax: [phone]


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html