Posted by
ctrueden on
Oct 20, 2016; 2:45pm
URL: http://imagej.273.s1.nabble.com/parallel-iterative-deconvolution-tp5004620p5017434.html
Hi Steve,
> If anyone has any ideas as to what might be causing the error with the
> ConcurrencyUtil class please do let me know. In the meantime I will
> continue to figure out what the problem is....
Unfortunately, I do not have time to help troubleshoot the workings of the
Parallel Iterative Deconvolution plugin with Fiji. However, I am curious
whether you have looked at the Richardson Lucy TV deconvolution algorithm
present in the ImageJ Ops project (
http://imagej.net/Ops): https://github.com/imagej/imagej-ops/tree/imagej-ops-0.
33.0/src/main/java/net/imagej/ops/deconvolve
The primary author, Brian Northan, gave a talk about it at the last ImageJ
conference, which you can watch here:
https://vimeo.com/140098821And slides at:
https://imagej.github.io/presentations/2015-09-04-imagej2-deconvolution/#/This code will improve and continue to be maintained.
I invite you to join the ImageJ Forum (
http://forum.imagej.net/) for
discussion, questions, problem solving, future planning, etc., relating to
deconvolution in ImageJ.
Regards,
Curtis
--
Curtis Rueden
LOCI software architect -
http://loci.wisc.edu/softwareImageJ2 lead, Fiji maintainer -
http://imagej.net/User:RuedenDid you know ImageJ has a forum?
http://forum.imagej.net/On Thu, Oct 20, 2016 at 6:57 AM, SteveWest <
[hidden email]> wrote:
> Dear all, I have now assessed on my Debian Machine, and the following error
> comes up:
>
> java.lang.NoSuchMethodError:
> edu.emory.mathcs.utils.ConcurrencyUtils.submit(Ljava/util/co
> ncurrent/Callable;)Ljava/util/concurrent/Future;
> at cern.colt.matrix.tfloat.impl.DenseFloatMatrix3D.zSum(Unknown
> Source)
> at
> edu.emory.mathcs.restoretools.iterative.wpl.WPLFloatIterativ
> eDeconvolver3D.<init>(Unknown
> Source)
> at
> edu.emory.mathcs.restoretools.iterative.ParallelIterativeDec
> onvolution3D$MainPanel$DeconvolveButtonActionListener$1.run(Unknown
> Source)
> at java.lang.Thread.run(Thread.java:745)
>
> I have found transforms.jar to be in both the jar and the PID folders. If
> I
> remove either of them the error remains. It seems to be along the same
> lines as the previous problem on the Mac.
>
> If anyone has any ideas as to what might be causing the error with the
> ConcurrencyUtil class please do let me know. In the meantime I will
> continue to figure out what the problem is....
>
> SJ.
>
>
>
> --
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>
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