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Re: parallel iterative deconvolution

Posted by bnorthan on Oct 20, 2016; 3:52pm
URL: http://imagej.273.s1.nabble.com/parallel-iterative-deconvolution-tp5004620p5017436.html

I'm happy to answer any questions regarding deconvolution.  As Curtis
mentioned the ImageJ forum is probably the best place to post questions,
mainly because it is easier to post links, images, etc.

If you are able to post images and psf I can try processing them.

On Thu, Oct 20, 2016 at 10:45 AM, Curtis Rueden <[hidden email]> wrote:

> Hi Steve,
>
> > If anyone has any ideas as to what might be causing the error with the
> > ConcurrencyUtil class please do let me know.  In the meantime I will
> > continue to figure out what the problem is....
>
> Unfortunately, I do not have time to help troubleshoot the workings of the
> Parallel Iterative Deconvolution plugin with Fiji. However, I am curious
> whether you have looked at the Richardson Lucy TV deconvolution algorithm
> present in the ImageJ Ops project (http://imagej.net/Ops):
>
>   https://github.com/imagej/imagej-ops/tree/imagej-ops-0.
> 33.0/src/main/java/net/imagej/ops/deconvolve
>
> The primary author, Brian Northan, gave a talk about it at the last ImageJ
> conference, which you can watch here:
>   https://vimeo.com/140098821
>
> And slides at:
>   https://imagej.github.io/presentations/2015-09-04-
> imagej2-deconvolution/#/
>
> This code will improve and continue to be maintained.
>
> I invite you to join the ImageJ Forum (http://forum.imagej.net/) for
> discussion, questions, problem solving, future planning, etc., relating to
> deconvolution in ImageJ.
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - http://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Thu, Oct 20, 2016 at 6:57 AM, SteveWest <[hidden email]>
> wrote:
>
> > Dear all, I have now assessed on my Debian Machine, and the following
> error
> > comes up:
> >
> > java.lang.NoSuchMethodError:
> > edu.emory.mathcs.utils.ConcurrencyUtils.submit(Ljava/util/co
> > ncurrent/Callable;)Ljava/util/concurrent/Future;
> >         at cern.colt.matrix.tfloat.impl.DenseFloatMatrix3D.zSum(Unknown
> > Source)
> >         at
> > edu.emory.mathcs.restoretools.iterative.wpl.WPLFloatIterativ
> > eDeconvolver3D.<init>(Unknown
> > Source)
> >         at
> > edu.emory.mathcs.restoretools.iterative.ParallelIterativeDec
> > onvolution3D$MainPanel$DeconvolveButtonActionListener$1.run(Unknown
> > Source)
> >         at java.lang.Thread.run(Thread.java:745)
> >
> > I have found transforms.jar to be in both the jar and the PID folders.
> If
> > I
> > remove either of them the error remains.  It seems to be along the same
> > lines as the previous problem on the Mac.
> >
> > If anyone has any ideas as to what might be causing the error with the
> > ConcurrencyUtil class please do let me know.  In the meantime I will
> > continue to figure out what the problem is....
> >
> > SJ.
> >
> >
> >
> > --
> > View this message in context: http://imagej.1557.x6.nabble.c
> > om/parallel-iterative-deconvolution-tp5004620p5017430.html
> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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