http://imagej.273.s1.nabble.com/Trakem2-importing-sequence-as-a-grid-tp5017596p5017605.html
Thank you for your answer. I know about the text file import feature.
about more than 5000 images here.
The trakem2 manual btw was the first source I consulted.
Dr. Stoyan P. Pavlov, MD, PhD
Medical University "Prof. Dr. Paraskev Stoyanov", Varna
Prof. Marin Drinov Str.55
> Hi Stephan,
> Thank you for your answer. I know about the text file import feature.
> The problem is that it is not that easy to generate the list: I am talking
> about more than 5000 images here.
> Best regards
> Stoyan
>
> ---
> Dr. Stoyan P. Pavlov, MD, PhD
> Departament of Anatomy, Histology and Embryology
> Medical University "Prof. Dr. Paraskev Stoyanov", Varna
> Prof. Marin Drinov Str.55
> 9002 Varna
> Bulgaria
> Tel: +359 (0) 52 - 677 - 052
> e-mail:
[hidden email]
>
[hidden email]
>
> 2016-11-18 18:07 GMT+02:00 Saalfeld, Stephan <
[hidden email]>:
>
>> Hi,
>>
>> the easiest way to import custom acquisition patterns is to generate an
>> import file and use "Import from text file". It is very easy to
>> generate such import file with e.g. Excel, OpenOffice Calc, or the
>> scripting language of your choice if your pattern is moderately
>> regular. If it's not, you have to do it anyways. This question has
>> been answered multiple times at various mailing lists but Web-Search is
>> hard if you do not know the terms yet ;)
>>
>> Here they are: "import text file TrakEM2"
>>
>> Documentation is here
>>
>>
https://www.ini.uzh.ch/~acardona/trakem2_manual.html#importing_list>>
>> Cheers,
>> Stephan
>>
>> On Fri, 2016-11-18 at 14:12 +0200, Stoyan Pavlov wrote:
>> > Dear friends,
>> > I recently started using TRAKEM2 for the stitching of microscopic
>> > mosaics.
>> > The thing I like the most is that it allows to export flattened
>> > (stitched
>> > and blended) image of any size. However I hit a bump and I hope
>> > someone can
>> > help:
>> > When I import sequence of images the tiles in every other row in the
>> > resulting grid are in reverse order. I guess the reason for this is
>> > that
>> > the plugin is importing the tiles in comb-like fashion. Is there a
>> > way to
>> > modify this behaviour in order to load the images in meander-like
>> > order,
>> > similarly to the sequential-continuous import in the MIST plugin (I
>> > like
>> > this plugin very much also, but unfortunately it doesn't allow the
>> > export
>> > of images >2 GPx).
>> > In other words TrakEM2 imports sequences now like this:
>> > 123
>> > 456
>> > 789
>> >
>> > Is there a way to force it to import them like this:
>> > 123
>> > 654
>> > 789
>> >
>> > Thank you in advance
>> >
>> > Stoyan
>> > ---
>> > Dr. Stoyan P. Pavlov, MD, PhD
>> > Departament of Anatomy, Histology and Embryology
>> > Medical University "Prof. Dr. Paraskev Stoyanov", Varna
>> > Prof. Marin Drinov Str.55
>> > 9002 Varna
>> > Bulgaria
>> > Tel: +359 (0) 52 - 677 - 052
>> > e-mail:
[hidden email]
>> >
[hidden email]
>> >
>> > --
>> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
>
>