http://imagej.273.s1.nabble.com/Trakem2-importing-sequence-as-a-grid-tp5017596p5017619.html
Dr. Stoyan P. Pavlov, MD, PhD
Medical University "Prof. Dr. Paraskev Stoyanov", Varna
Prof. Marin Drinov Str.55
> Hi Stephan,
> Thank you for your answer. I know about the text file import feature.
> The problem is that it is not that easy to generate the list: I am talking
> about more than 5000 images here.
> The trakem2 manual btw was the first source I consulted.
> Best regards
> Stoyan
>
> ---
> Dr. Stoyan P. Pavlov, MD, PhD
> Departament of Anatomy, Histology and Embryology
> Medical University "Prof. Dr. Paraskev Stoyanov", Varna
> Prof. Marin Drinov Str.55
> 9002 Varna
> Bulgaria
> Tel: +359 (0) 52 - 677 - 052
> e-mail:
[hidden email]
>
[hidden email]
>
> 2016-11-19 1:24 GMT+02:00 Stoyan Pavlov <
[hidden email]>:
>
>> Hi Stephan,
>> Thank you for your answer. I know about the text file import feature.
>> The problem is that it is not that easy to generate the list: I am
>> talking about more than 5000 images here.
>> Best regards
>> Stoyan
>>
>> ---
>> Dr. Stoyan P. Pavlov, MD, PhD
>> Departament of Anatomy, Histology and Embryology
>> Medical University "Prof. Dr. Paraskev Stoyanov", Varna
>> Prof. Marin Drinov Str.55
>> 9002 Varna
>> Bulgaria
>> Tel: +359 (0) 52 - 677 - 052
>> e-mail:
[hidden email]
>>
[hidden email]
>>
>> 2016-11-18 18:07 GMT+02:00 Saalfeld, Stephan <
[hidden email]>
>> :
>>
>>> Hi,
>>>
>>> the easiest way to import custom acquisition patterns is to generate an
>>> import file and use "Import from text file". It is very easy to
>>> generate such import file with e.g. Excel, OpenOffice Calc, or the
>>> scripting language of your choice if your pattern is moderately
>>> regular. If it's not, you have to do it anyways. This question has
>>> been answered multiple times at various mailing lists but Web-Search is
>>> hard if you do not know the terms yet ;)
>>>
>>> Here they are: "import text file TrakEM2"
>>>
>>> Documentation is here
>>>
>>>
https://www.ini.uzh.ch/~acardona/trakem2_manual.html#importing_list>>>
>>> Cheers,
>>> Stephan
>>>
>>> On Fri, 2016-11-18 at 14:12 +0200, Stoyan Pavlov wrote:
>>> > Dear friends,
>>> > I recently started using TRAKEM2 for the stitching of microscopic
>>> > mosaics.
>>> > The thing I like the most is that it allows to export flattened
>>> > (stitched
>>> > and blended) image of any size. However I hit a bump and I hope
>>> > someone can
>>> > help:
>>> > When I import sequence of images the tiles in every other row in the
>>> > resulting grid are in reverse order. I guess the reason for this is
>>> > that
>>> > the plugin is importing the tiles in comb-like fashion. Is there a
>>> > way to
>>> > modify this behaviour in order to load the images in meander-like
>>> > order,
>>> > similarly to the sequential-continuous import in the MIST plugin (I
>>> > like
>>> > this plugin very much also, but unfortunately it doesn't allow the
>>> > export
>>> > of images >2 GPx).
>>> > In other words TrakEM2 imports sequences now like this:
>>> > 123
>>> > 456
>>> > 789
>>> >
>>> > Is there a way to force it to import them like this:
>>> > 123
>>> > 654
>>> > 789
>>> >
>>> > Thank you in advance
>>> >
>>> > Stoyan
>>> > ---
>>> > Dr. Stoyan P. Pavlov, MD, PhD
>>> > Departament of Anatomy, Histology and Embryology
>>> > Medical University "Prof. Dr. Paraskev Stoyanov", Varna
>>> > Prof. Marin Drinov Str.55
>>> > 9002 Varna
>>> > Bulgaria
>>> > Tel: +359 (0) 52 - 677 - 052
>>> > e-mail:
[hidden email]
>>> >
[hidden email]
>>> >
>>> > --
>>> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>
>>> --
>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>>
>>
>