Re: Problems loading TrakEM XML files

Posted by jgbr20 on Nov 23, 2016; 10:31pm
URL: http://imagej.273.s1.nabble.com/Problems-loading-TrakEM-XML-files-tp5001502p5017620.html

Hello,

I am a final year undergraduate student working on a project that involves using TrackEM2. For some reason, my file came up as an error when I opened it via Fiji. I think this is a similar problem to you Jorg. I'm just wondering if you found a solution to this? The error came up as follows.

StdOut
WARNING: could not delete crash detector file .open.t2 from trakem2.mipmaps folder at C:/Users/JovenGerardBenesa/Fiji.app/trakem2.1476899785442.2053776621.1560497569/trakem2.mipmaps/
MAX_MEMORY: 8251891712
cache size: 3300756736
project file path 2: C:/Users/JovenGerardBenesa/Fiji.app/FYProject.xml.gz
Loader.openFSProject: path is C:/Users/JovenGerardBenesa/Fiji.app/FYProject.xml.gz
storage folder is C:/Users/JovenGerardBenesa/Fiji.app/
mipmaps folder is C:/Users/JovenGerardBenesa/Fiji.app/trakem2.1476899785442.2053776621.1560497569/trakem2.mipmaps/
Set mipmap format to 4
WARNING: could not delete crash detector file .open.t2 from trakem2.mipmaps folder at C:/Users/JovenGerardBenesa/Fiji.app/trakem2.1476899785442.2053776621.1560497569/trakem2.mipmaps/


Fatal error: column=829 line=17436
==================
ERROR:
org.xml.sax.SAXParseException: Premature end of file.
at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl.parse(Unknown Source)
at ini.trakem2.persistence.FSLoader.openFSProject(FSLoader.java:298)
at ini.trakem2.Project.openFSProject(Project.java:554)
at ini.trakem2.Project.openFSProject(Project.java:544)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at HandleExtraFileTypes.tryOpen(HandleExtraFileTypes.java:298)
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:485)
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)
at ij.IJ.runUserPlugIn(IJ.java:217)
at ij.IJ.runPlugIn(IJ.java:181)
at ij.IJ.runPlugIn(IJ.java:170)
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)
at ij.io.Opener.openImage(Opener.java:369)
at ij.io.Opener.openImage(Opener.java:243)
at ij.io.Opener.open(Opener.java:110)
at ij.io.Opener.openAndAddToRecent(Opener.java:292)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
at java.lang.Thread.run(Thread.java:662)
==================

I would appreciate any kind of help. Thank you.

Best,

Joven

P.S. I've tried using Albert's suggestion below about using a text editor, but those lines/columns in my case (17436, 829) don't even exist in the file?