http://imagej.273.s1.nabble.com/Trakem2-importing-sequence-as-a-grid-tp5017596p5017621.html
specified. A small script could do the work for you. If you can't write it,
> I found a way around this:
> I feed the images to the MIST plugin (which is great but can't generate
> image greater than 2 GPx) and then I parse the global coordinates from the
> file generated by it to trakem2 (after editing to fit the trakem2
> conventions).
>
> Hopefully this will be solved soon however, because seems like a waste for
> processing time.
>
> Best wishes ,
> Stoyan
>
> ---
> Dr. Stoyan P. Pavlov, MD, PhD
> Departament of Anatomy, Histology and Embryology
> Medical University "Prof. Dr. Paraskev Stoyanov", Varna
> Prof. Marin Drinov Str.55
> 9002 Varna
> Bulgaria
> Tel: +359 (0) 52 - 677 - 052
> e-mail:
[hidden email]
>
[hidden email]
>
> 2016-11-19 1:25 GMT+02:00 Stoyan Pavlov <
[hidden email]>:
>
> > Hi Stephan,
> > Thank you for your answer. I know about the text file import feature.
> > The problem is that it is not that easy to generate the list: I am
> talking
> > about more than 5000 images here.
> > The trakem2 manual btw was the first source I consulted.
> > Best regards
> > Stoyan
> >
> > ---
> > Dr. Stoyan P. Pavlov, MD, PhD
> > Departament of Anatomy, Histology and Embryology
> > Medical University "Prof. Dr. Paraskev Stoyanov", Varna
> > Prof. Marin Drinov Str.55
> > 9002 Varna
> > Bulgaria
> > Tel: +359 (0) 52 - 677 - 052
> > e-mail:
[hidden email]
> >
[hidden email]
> >
> > 2016-11-19 1:24 GMT+02:00 Stoyan Pavlov <
[hidden email]>:
> >
> >> Hi Stephan,
> >> Thank you for your answer. I know about the text file import feature.
> >> The problem is that it is not that easy to generate the list: I am
> >> talking about more than 5000 images here.
> >> Best regards
> >> Stoyan
> >>
> >> ---
> >> Dr. Stoyan P. Pavlov, MD, PhD
> >> Departament of Anatomy, Histology and Embryology
> >> Medical University "Prof. Dr. Paraskev Stoyanov", Varna
> >> Prof. Marin Drinov Str.55
> >> 9002 Varna
> >> Bulgaria
> >> Tel: +359 (0) 52 - 677 - 052
> >> e-mail:
[hidden email]
> >>
[hidden email]
> >>
> >> 2016-11-18 18:07 GMT+02:00 Saalfeld, Stephan <
>
[hidden email]>
> >> :
> >>
> >>> Hi,
> >>>
> >>> the easiest way to import custom acquisition patterns is to generate an
> >>> import file and use "Import from text file". It is very easy to
> >>> generate such import file with e.g. Excel, OpenOffice Calc, or the
> >>> scripting language of your choice if your pattern is moderately
> >>> regular. If it's not, you have to do it anyways. This question has
> >>> been answered multiple times at various mailing lists but Web-Search is
> >>> hard if you do not know the terms yet ;)
> >>>
> >>> Here they are: "import text file TrakEM2"
> >>>
> >>> Documentation is here
> >>>
> >>>
https://www.ini.uzh.ch/~acardona/trakem2_manual.html#importing_list> >>>
> >>> Cheers,
> >>> Stephan
> >>>
> >>> On Fri, 2016-11-18 at 14:12 +0200, Stoyan Pavlov wrote:
> >>> > Dear friends,
> >>> > I recently started using TRAKEM2 for the stitching of microscopic
> >>> > mosaics.
> >>> > The thing I like the most is that it allows to export flattened
> >>> > (stitched
> >>> > and blended) image of any size. However I hit a bump and I hope
> >>> > someone can
> >>> > help:
> >>> > When I import sequence of images the tiles in every other row in the
> >>> > resulting grid are in reverse order. I guess the reason for this is
> >>> > that
> >>> > the plugin is importing the tiles in comb-like fashion. Is there a
> >>> > way to
> >>> > modify this behaviour in order to load the images in meander-like
> >>> > order,
> >>> > similarly to the sequential-continuous import in the MIST plugin (I
> >>> > like
> >>> > this plugin very much also, but unfortunately it doesn't allow the
> >>> > export
> >>> > of images >2 GPx).
> >>> > In other words TrakEM2 imports sequences now like this:
> >>> > 123
> >>> > 456
> >>> > 789
> >>> >
> >>> > Is there a way to force it to import them like this:
> >>> > 123
> >>> > 654
> >>> > 789
> >>> >
> >>> > Thank you in advance
> >>> >
> >>> > Stoyan
> >>> > ---
> >>> > Dr. Stoyan P. Pavlov, MD, PhD
> >>> > Departament of Anatomy, Histology and Embryology
> >>> > Medical University "Prof. Dr. Paraskev Stoyanov", Varna
> >>> > Prof. Marin Drinov Str.55
> >>> > 9002 Varna
> >>> > Bulgaria
> >>> > Tel: +359 (0) 52 - 677 - 052
> >>> > e-mail:
[hidden email]
> >>> >
[hidden email]
> >>> >
> >>> > --
> >>> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>>
> >>> --
> >>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >>
> >>
> >
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>