Posted by
Lai Ding on
Nov 30, 2016; 2:11pm
URL: http://imagej.273.s1.nabble.com/question-on-stack-histogram-macro-tp5017654p5017657.html
Thanks for everyone's input.
The getHistogram() can only get info from a single slice. For the stack image, I realize the sample code of "StackHistogramLister" can be modified for my purpose.
https://imagej.nih.gov/ij/macros/StackHistogramLister.txtHowever, I feel since the run("Histogram", "stack") already have the histogram of the whole stack, there may be a simple way to retrieve the information rather than redo the whole thing through macro codes.
Best
Lai
-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Cammer, Michael
Sent: Tuesday, November 29, 2016 9:40 PM
To:
[hidden email]
Subject: Re: question on stack histogram macro
Look at the getHistogram command at
https://imagej.nih.gov/ij/developer/macro/functions.html#G .
Instead of run("Histogram", "stack"); use the getHistogram command.
_________________________________________
Michael Cammer, Optical Microscopy Specialist
http://ocs.med.nyu.edu/microscopy http://microscopynotes.com/Cell: (914) 309-3270
________________________________________
From: ImageJ Interest Group [
[hidden email]] on behalf of Lai Ding [
[hidden email]]
Sent: Tuesday, November 29, 2016 9:32 PM
To:
[hidden email]
Subject: question on stack histogram macro
Hello There,
I have a simple question on acquiring stack histogram.
If I have a stack image named "raw", I can use "Analyze" --> "Histogram" to get the stack histogram. the ImageJ will show the histogram in a new window named "Histogram of raw". once I click the "List" button in the new window, it will show all the bins and counts in a table, then I can save teh table as a xls file.
My question is how to achieve this in macro language. once I run
selectImage("raw");
run("Histogram", "stack");
how do I open the stack histogram table ( as manully click the "List" button)?
Thanks
Lai
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