Re: Cannot use TurboReg plugin by using matlab

Posted by Yuekan Jiao-2 on Dec 02, 2016; 6:58pm
URL: http://imagej.273.s1.nabble.com/Cannot-use-TurboReg-plugin-by-using-matlab-tp5017668p5017678.html

Hi,

I have a comment that may or may not be related to the error (presumably a
different one). If the source and target are files, please make sure the
file paths do not contain spaces, they cause a problem in my ImageJ/Fiji
plugin code. One way to get around this problem is to use windows for
source and target, and load images onto the windows for TurboReg alignment.

Yuekan

On Fri, Dec 2, 2016 at 8:38 AM, Curtis Rueden <[hidden email]> wrote:

> Hi Chunyue,
>
> > I still cannot use TurboReg plugin
>
> Presumably you receive a different error message now? Could you please
> describe exactly how it fails?
>
> This guide might help:
> http://imagej.net/Bug_reporting_best_practices
>
> Regards,
> Curtis
>
>
> --
> Curtis Rueden
> LOCI software architect - http://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Fri, Dec 2, 2016 at 8:30 AM, LCY <[hidden email]> wrote:
>
> > Dear Curtis,
> >
> > Thank you very much for your help!
> >
> > I have tried your method, however, it cannot solve my problem. I still
> > cannot use TurboReg plugin by using following Matlab command:
> >
> > MIJ.run('TurboReg ', ['-align ', '-file ',fileNames{1,1},' ','0 0 ',
> > num2str(width),' ',num2str(height),' ',...
> >     '-file ','AVG_',fileNames{1,1},' ','0 0 ',num2str(width),' ',
> > num2str(height) ,' ','-rigidBody ',num2str(width/2),...
> >     ' ',num2str(height/2),' ',num2str(width/2),' ',num2str(height/2),'
> ','0
> > ',num2str(height/2),' ','0 ',...
> >     num2str(height/2),' ',num2str(width-1),' ',num2str(height/2),'
> > ',num2str(width-1),' ',num2str(height/2),' ','-showOutput']);
> >
> > Thank you all the same.
> >
> > All the best,
> >
> > Chunyue
> >
> >
> >
> > --
> > View this message in context: http://imagej.1557.x6.nabble.
> > com/Cannot-use-TurboReg-plugin-by-using-matlab-tp5017668p5017676.html
> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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