Posted by
TimFeinstein on
Jan 11, 2017; 9:28pm
URL: http://imagej.273.s1.nabble.com/Bio-Formats-problem-tp5017863.html
Hi folks,
Is anyone else having trouble with Bio-Formats? Suddenly I cannot import either .nd2's from an A1 confocal or .lif's from our DMI6000. It seems like a general problem with Bio-Formats. I tried updating ImageJ (1.51h) and Fiji (through the Help menu, some Bio-Formats components updated). Still no luck. The error report is below. The files open with no problem using ImageJ for OSX with Java 1.8 and the files seem to open fine, I just have to shuttle everything over to Fiji as TIFFs to work with my plugins.
Best,
Tim
Timothy Feinstein, Ph.D.
Research Scientist
University of Pittsburgh Department of Developmental Biology
------------------------------------------------------------
Unable to retrieve constructor for class loci.formats.services.OMEXMLServiceImpl
at loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:190)
at loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:161)
at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:652)
at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter.run(LociImporter.java:78)
at ij.IJ.runUserPlugIn(IJ.java:217)
at ij.IJ.runPlugIn(IJ.java:181)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NoClassDefFoundError: loci/common/xml/XMLTools$SchemaReader
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:185)
... 12 more
Caused by: java.lang.ClassNotFoundException: loci.common.xml.XMLTools$SchemaReader
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 15 more
loci.formats.FormatException: Unable to retrieve constructor for class loci.formats.services.OMEXMLServiceImpl
at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:661)
at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter.run(LociImporter.java:78)
at ij.IJ.runUserPlugIn(IJ.java:217)
at ij.IJ.runPlugIn(IJ.java:181)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)
Caused by: Unable to retrieve constructor for class loci.formats.services.OMEXMLServiceImpl
at loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:190)
at loci.common.services.ServiceFactory.getInstance(ServiceFactory.java:161)
at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:652)
... 10 more
Caused by: java.lang.NoClassDefFoundError: loci/common/xml/XMLTools$SchemaReader
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at loci.common.services.ServiceFactory.getConstructor(ServiceFactory.java:185)
... 12 more
Caused by: java.lang.ClassNotFoundException: loci.common.xml.XMLTools$SchemaReader
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 15 more
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