Re: "Block Matching Correspondences" Plugin Run Via Macro

Posted by Straub, Volko A. (Dr.) on Jan 15, 2017; 6:33am
URL: http://imagej.273.s1.nabble.com/Block-Matching-Correspondences-Plugin-Run-Via-Macro-tp5017882p5017899.html

Hi,

Okay, I noticed that you had commented out the line, but assumed that
this was just to make the macro run. Anyway, looks like there are issues
when you try to pass your arguments. See macro documentation of 'run'
command for details
(https://imagej.nih.gov/ij/developer/macro/functions.html#R). I suspect
that trying to include a conditional statement (;b>TargetImg*) will
cause problems. The ; is probably also unnecessary and the wildcard
character '*' at the end might cause further problems. If you only want
to execute the command for certain images, put the whole command inside
an if-statement.

Hope this helps,
Volko


On 14/01/2017 12:06, GP wrote:

> Hie!
>
> Thanks for noticing but its an inactive statement I forgot to delete it .
> Sorry about that.
> Please let me know if you find any other loophole or ideas.
>
> Best Regards,
>
> On Sat, Jan 14, 2017 at 11:48 AM, Volko Straub [via ImageJ] <
> [hidden email]> wrote:
>
>> Hi,
>>
>> There appears to be a mismatch between the variable name used by
>> getTitle() and the subsequent call of selectWindow(). Your getTitle()
>> call assigns the image name to a variable called TargetImg. However,
>> your selectWindow call uses a variable TargetTitle, which is not defined
>> in your macro.
>>
>> Hope this helps,
>> Volko
>>
>> On 14/01/2017 02:09, GP wrote:
>>
>>> Hie!
>>>
>>> I have concocted a rudimentary macro (below). The problem is that for
>> some
>>> reason I can't specify the target image. I have tried several
>> combinations
>>> of SelectWindow, selectImageiID etc commands but could not make it work.
>>>
>>> /run("Clear Results");
>>>
>>> dir1 = getDirectory("Choose  Directory ");
>>> list = getFileList(dir1);
>>>
>>> setBatchMode(false);
>>> for (i=0;i<list.length;i++) {
>>>
>>>
>>>         if (endsWith(list[i],&quot;tif&quot;) ||
>>> endsWith(list[i],&quot;TIF&quot;)){
>>>         open(dir1+ list[i]);
>>>         TargetImg= getTitle();
>>>         open(&quot;/Users.../temp/WE00001---CO2_qmle.tif&quot;);
>>>         //tt= selectWindow(TargetTitle);
>>> run(&quot;Extract Block Matching Correspondences&quot;,
>>> &quot;source_image=WE00001---CO2_qmle.tif target_image=&lt;b>TargetImg*
>>> layer_scale=1 search_radius=50 block_radius=50 resolution=24
>>> minimal_pmcc_r=0.10 maximal_curvature_ratio=1000
>>> maximal_second_best_r/best_r=1 use_local_smoothness_filter
>>> approximate_local_transformation=Rigid local_region_sigma=65
>>> maximal_local_displacement=12 maximal_local_displacement=3");
>>>         close();
>>>         } } /
>>>
>>> Kindly let me know what am I missing out here.
>>> Help will be much appreciated.
>>> Thanks a lot
>>>
>>>
>>>
>>> --
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>> com/Block-Matching-Correspondences-Plugin-Run-Via-Macro-tp5017882p5017890.
>> html
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>>>
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