Background substraction and LUT inconsitent on a folder
Posted by
Eric Denarier on
Feb 20, 2017; 1:34pm
URL: http://imagej.273.s1.nabble.com/Background-substraction-and-LUT-inconsitent-on-a-folder-tp5018144.html
Hi All,
With the following code several of the images (image size 356ko) of a
folder are saved with their original color instead of beeing all orange.
Any suggestion ?
It may seem that adding a wait(100); after run ("Orange Hot"); is working
but then how to know what should be the "wait" value???
Is there an other way to fix the problem ??
enclosed two files for a test.
Thanks for your help
I used Both FIJI : image2 2.0.0-rc-56/1.51h
and ImageJ 1.51i5
on Windows7 with the same problems
Thank you
/////////// Code here //////////
inputDir = getDirectory("Choose Source Directory ");
outputDir = getDirectory("Choose Destination Directory ");
list = getFileList(inputDir);
for (k=0; k<list.length; k++) {
open(inputDir +list[k]);
run ("Subtract Background...", "rolling=100");
run( "Orange Hot", "");
saveAs("Jpeg", outputDir +list[k]);
close(); }
--
Eric Denarier
Grenoble Institut des Neurosciences
Inserm U1216
Chemin Fortuné Ferrini
38700 La Tronche
France
Tél :33 (0)4 565 205 38
http://neurosciences.ujf-grenoble.fr/--
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