http://imagej.273.s1.nabble.com/Background-substraction-and-LUT-inconsitent-on-a-folder-tp5018144p5018150.html
I also removed the overlays but it does the same. Strange behavior !!!
> I noticed that there is an overlay on your images. If I remove the overlay I can save with the new LUT or for example as 16-bit, what also does not seem to work for your images.
>
> Not sure if this is intended behaviour...
>
> Kees
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Eric Denarier
> Sent: 20 February 2017 13:34
> To:
[hidden email]
> Subject: Background substraction and LUT inconsitent on a folder
>
> Hi All,
> With the following code several of the images (image size 356ko) of a folder are saved with their original color instead of beeing all orange.
> Any suggestion ?
>
>
> It may seem that adding a wait(100); after run ("Orange Hot"); is working
>
> but then how to know what should be the "wait" value???
>
> Is there an other way to fix the problem ??
>
>
> enclosed two files for a test.
>
> Thanks for your help
>
>
> I used Both FIJI : image2 2.0.0-rc-56/1.51h
> and ImageJ 1.51i5
> on Windows7 with the same problems
>
>
> Thank you
>
>
> /////////// Code here //////////
>
> inputDir = getDirectory("Choose Source Directory ");
> outputDir = getDirectory("Choose Destination Directory ");
> list = getFileList(inputDir);
>
> for (k=0; k<list.length; k++) {
> open(inputDir +list[k]);
>
> run ("Subtract Background...", "rolling=100");
> run( "Orange Hot", "");
> saveAs("Jpeg", outputDir +list[k]);
> close(); }
>