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Re: Z-Axis Plot: Multi-Channel?

Posted by Jacob Keller-2 on Mar 10, 2017; 4:35pm
URL: http://imagej.273.s1.nabble.com/Z-Axis-Plot-Multi-Channel-tp5018253p5018286.html

Yes! It works, and I'll give the multiplot a shot as well--you are right,
it should be useful. I noticed that the y-axis of the plot always has zero
at the bottom, whereas the native plotter scales to fit, apparently, the
min/max of the trace. Unless you know off-hand, I will try to figure out
where to toggle this, since sometimes it's helpful to have the
min/max-scaled y-axis.

Thanks very much--I've been looking for something like this for a long time!

Jacob

On Fri, Mar 10, 2017 at 10:12 AM, Tiago Ferreira <
[hidden email]> wrote:

> Dear Jacob,
>
> Just pushed a new release (BAR 1.1.13) to the updater [1].
>
> You can access 'BAR>Analysis>Multichannel ZT-axis Profile' after running
> 'Help>Update Fiji..' and subscribing to the BAR update site[2]
> If you need to edit the script, you can do so using the 'Shift-trick'[3]
>
> This release has also a 'Multi_ROI_Profiler' script that plots ROI
> intensities over
> time that you may find useful. (I wrote it to monitor iGluSnFR/jRGECO
> fluorescence)
>
> [1] https://github.com/tferr/Scripts/releases
> [2] http://imagej.net/BAR#Installation
> [3] http://imagej.net/BAR#OpeningBAR
>
>
> On Mar 9, 2017, at 12:31, Keller, Jacob <[hidden email]> wrote:
> > How can I get this into the code?
>
> Sorry, I do not understand that question.
> If you bump into any issues, it is better to use http://forum.imagej.net
>
> HTH,
> -tiago
>
>
>

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