iterating over slices in volume?

Posted by Kenneth Sloan-2 on Mar 15, 2017; 3:14pm
URL: http://imagej.273.s1.nabble.com/iterating-over-slices-in-volume-tp5018309.html

I apologize if this is a repeat - I didn’t see it post and I haven’t seen a reply.  I think this is easy.

I need to iterate a process over all slices of a volume (the current candidate is to adjust Brightness&Contrast.  Can someone please provide a pointer on how to do this?

In processing these volumes, I first handle individual slices as individual images - but they are then aligned and cropped and assembled into a volume.  The cropping changes enough things so that another pass of adjusting brightness & contrast is called for.  I’d like to avoid unpacking the volume into a collection of separate files, using Batch Processor to adjust them, and then re-assemble.  Is there a way to iterate through the slices “in place”?

—
Kenneth Sloan
[hidden email]




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